cnga3a (LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584)


Basic Information

Item Value
gene id cnga3a
gene name LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19071405 ~ 19078891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241881.1
CTTagaataaatcattataaaaataaacaaatgttgcCTTAAGGATAAGTAATACAAATAACAGATGGATTATaaacattgtgttttgtttggttgTACAAATGGCAGAGCCATTAGCGTTTATCATTGCTACTGAATATTAATGAGACGACGAGCGCTAGGCTCCGCCCACGTCCACATCGAAAGCTCGGAGCTGTCAGTCATCTGAGGAGCCGAGGACTTCTGAACGCATCATTTTACCggtctattaaaaaaaaattggacatCTAAGAATCACACATCATCACAGTCTAGAGAAGACTGGCGATGGAAGCAAAAGTGGGTGAAAACTGATGGCCAAAAATGCAAACTCGACTTAGTTCTTTAAAGATGGGATTGTACATAACACTGAGCAGGATCACCAATTGCTTGAACCAAAGAGCAACTTGAACAGGGATTCTGTTTGAACCTGGGTCTCTAAATCTGTTGGACTACTAAATATTGTTGCTTCGCAGTGCTGAATGCCTAGAAAAggcaaagagaagaaagagaatggCGAAGATCTGTACAGAGCAATCCTACCCATCCAGGCCCAGGCTCTCGGACCGAGCCTCTGAAGATGAACTGGACGAGACGAATGGTGCAAGCAGGGCGCATTCACTATGTGAGGAAAACTCTGACATGCAAGGCATAATTTCTTCTGCAACCAGCCAGTTTCAGGAATCCAGGAGGAGCTCTTTTACAGGTGCTGGGGCCATGGCAAGGCTCACCCAGTTTCTGCTAAGGCTGAGGAACTGGGCATCACACAGAATTCACAGAGAGGTTGAACGTCCCGACTCCTTTTTGGAGCGATTCCGCGGACCTGACCTTAAAGACTTATCTAGCCGTGGAAGTAATGCCCGGTCCTCTATTGGCCTTCCTGACAGGCCTCATAAGAGGAAAAAAGCCAAACAGTGGCCTCTGGCAGCTTACAATATGAACAACTGCAATAACACAGATGACAAAAAGGAGGacaaaaaggaagaaataaaaaaagatgaagacaagaaggaagagaaaaaagatgagaaggaagagaaaaaagatgagaaggaagagaaaaaagatgagaaaaaagatgaaaaggatgagaaaaaagatgagaaaaagGATGAgaaaaaagatgagaaaaagGACGAAAAGAAGGATGATAAGAAAgatgataaaaagaaagatgctCCTCCTCCGCCGAAAGAAGTGTGGATCATGGACCCAGCCTCAGACAAGTATTACAGATGGCTTTCAGTCATAGCAGCCCCAGTGTTTTACAACCTGATGATGCTGGTCACAAGGGCCTGTTTCAACGAGCTTCAGAATTCTTACACGATGCTTTGGATCATCATGGACTATACCTCAGATGTAATCTATTATGCAGACACATTTGTCAGATCAAGAACAGgcttctTGGAGCAGGGTCTCCTTGTCAAAGACTCTAAGAAGTTGATGAATCATTACAGGACGATCCCACAGTTTAAATATGACATGTTTTCAATGATCCCGACGGATATAATAATGCTGAAAGTGGGCTTCAACAATCCCGAACTTCGCTTCAACCGCCTTTTCAAAATGGCACGCCTCTTTGAGTTCTTCGACCGCACGGAAACCCGAACAAACTACCCGAACATTTTCCGCATCAGCAACCTCGTACTTTACATCCTGATTATTATTCACTGGAACGCTTGCATTTTCTTTGCCATTTCCAAAACGATTGGCTTTGGGACTGACACGTGGGTATATCCAAACATCAGCCATCCAGAATACGGCCGCTTGGCTAGAAAATACATCTACTGTCTGTACTGGTCCACTCTTACTCTCACCACCATCGGAGAAACACCACCTCCTGTTAGAGACATTGAATACTTGTTTGTCGTCATGGACTTTCTCATCGGAGTGTTGATTTTCGCTACCATCGTCGGTAACGTCGGTGCCATGATCTCCAACATGAACGCTTCTCGTGCTGAATTTCAGGCCAAGATTGACTCCATCAAGCAGTACATGCAGTTCCGTAAAGTCAGCAAAGACCTGGAGGCCAGGGTCATCAAGTGGTTCGACTACCTTTGGACGGAGAAAAAGACTTGCGATGAGAAGGAAGTCCTGAAGAACCTTCCAGACAAACTCAAAGCTGAAATAGCCATTAATGTCCATTTAGATACACTGAAGAAGGTGCGAATCTTCCAGGATTGTGAAGCTGGACTTCTTATCGAGTTGGTGTTGAAGCTGCAGCCTCAGGTGTTCAGTCCTGGagattatatatgtaaaaaaggGGACATTGGTCGAGAAATGTACATTATCAAAGAAGGAAAGCTTGCCGTGGTGGCCGATGACGGCATCACGCAGTTTGTGGTGCTCAGTGACGGCGCTTACTTCGGAGAGATCAGTATCCTCGGAATCAAAGGCAGTAAAGCCGGAAACAGAAGAACGGCAAACATTCGTAGCGTCGGCTATTCGGACCTCTTCGCGCTGTCTAAAGATGACCTCGTGGAAGCGCTTACCGAATACCCAGATGCCAAAAAAGCCCTGGAGGAGAAAGGAAAGGCCATCTTAAGAAAGGACAACCTTCTTGACGAGGCGATTGCGGGCGCCGGTGCCGATCCCAAAGATCTGGAAGAGAAGATTCACCGCCTCGAGAGCAACCTTGAAGTCATGATGGGCAAGTTCGCCAAGCTTATGGCAGAATACACATCCTACCAGAGCAAGATGAAACAGAGGATCACCAACATGGAGGGCAAAGTGAAAACACTTCGGGTGGAAGATCTATCTGAGGTTGTTGAggacaaaaaagaagaagagaagaagaccAAATAGGCAACAGCATAGACATCGGGGTTAATGGGGTTTCCTATCCATGGACATATTTCTTAACATAgtacattacttttaaaatgtttatacttatttataagTTTTACATGACAATGTTGTACTaattgccatatatatatatgtgttgaAATGTAATGCtgatgtatttattcaatatgtGCAGTAAGAACAGATCAGATGACAGACAGGGAAGAGAGATACACTACCGTTCGAAAGTTTGGggttttaaaatgattgcatatttttaaaacaatgtttattatgCTCACTCAGGCCGTATTTATATTTACGGGAAAAATATTAATACcctgaaatattatcacaattgaaaatattttcttaagaTTTTTCTGTATGAActtaatgcaaaatgtaatttatgctgACAGGGGTGCGCAAGAAGCATTTCACATCATGATCAGCGCTGATGCATAAACACTAtacaaatgtctttacatttattaactCATTAAAACTGCTTGGCATTATATCTTTGGCTACTTTGTAACATTAGTGTTTCTTTGTGGTTTCTGTCAAAAACGTGGCCAAAAAGGCACTTTGTAATGGATGAGGTCTACATTTATAGGTCAGACTCTTTAATTTTTGATTTGGTGCaagtatgaaaaaatatattttaaatgagcatttAATTACTCTGACAATGATGTTCTGATTCTGCGcattaaacaattatattaatattaacgaTTACATAAATTTCATAATATGGCTAATAGCAATGTTTGAAAAACAAGTCAACATGGACAAAGCTAAAATCATCCCCAACACAAGCcaaaacattttagtatttattatccAAGAGTAcccaaaatgtgttctttaatAAATGTTCTAACAACTGTTGTTTGCTTgtcaatgcatttcttttaaaagtaatattattcaGTGGACTACAAAAGCTGGACTGGAAGTTCTCAAAATACCAGGCATGtattgtgtgtgcatgtcattTTAGGGACCACAAACTGTACTCATAGAGAAAATCTGATATAGAAAAGGTGAAACAGTGCATGTCCAAATGTAGTGCTGACAAAGGATTAATCGCGATTAgaagcatccaaaataaaagtttgtttatatatgcatgtatactgtgcatatttatgcataaatatgaacatagacttgtaaacagatttttatttccttgtaaaatatatatattttttaaataaacatgcatgtgtttttatatatagataataaaatgaacagaatacacaccacacatacattatgcaaacaaaagctTATTTTGGATTAATAGAATGCagttaatcgtttgacagcaactataataataattgcatataattattttttttattaactgaccCGTTTGATGCTAGACACCAGGCAACTTAATCCTAAAGTgactaaaatctttttttattaaaagctaaaCTATGTTTATAAAAGAGCTAAAGTATTTAGGC

Function

NR:

description
cyclic nucleotide-gated cation channel alpha-3-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241881.1 True 4298 mRNA 0.40 9 19071405 19078891

Neighbor

gene id symbol gene type direction distance location
LOC122346582 LOC107584426,LOC107673614,LOC107712092 coding downstream 82965 18986050 ~ 18988440 (-)
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding downstream 305922 18763245 ~ 18765483 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding downstream 327289 18743065 ~ 18744116 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding downstream 365673 18702854 ~ 18705732 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 582531 18458127 ~ 18488874 (-)
hdac7b NA coding upstream 34787 19113678 ~ 19123976 (-)
tns2b LOC107711076,LOC107673525,LOC107585141 coding upstream 74148 19153039 ~ 19173171 (-)
eif4bb eif4bb,LOC107673526,LOC107711078,LOC107585139,LOC107582715,LOC107733597 coding upstream 96975 19175866 ~ 19187427 (-)
LOC122347293 LOC107711003,LOC107667371,LOC107585181,LOC107673453,LOC107711002 coding upstream 109604 19188495 ~ 19190509 (-)
stat2 LOC107673542,LOC107711071,LOC107585138,LOC107667368,LOC107733592,LOC107582712 coding upstream 142402 19221293 ~ 19232799 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 22569 19044628 ~ 19048836 (-)
G46476 NA non-coding downstream 27536 19043616 ~ 19043869 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding downstream 99035 18970170 ~ 18972370 (-)
G46444 NA non-coding downstream 185005 18882852 ~ 18886400 (-)
G46439 NA non-coding downstream 212934 18857712 ~ 18858471 (-)
LOC122347223 NA non-coding upstream 70855 19149746 ~ 19151694 (-)
G46509 NA non-coding upstream 133748 19212639 ~ 19242811 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding upstream 314586 19393477 ~ 19397730 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding upstream 527471 19606362 ~ 19607056 (-)
G46658 NA non-coding upstream 712751 19791642 ~ 19792328 (-)
G46478 NA other downstream 15274 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 353917 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 363809 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 426271 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 1297298 17743715 ~ 17774107 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 36170 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 474426 19553317 ~ 19555942 (-)
tomm6 NA other upstream 762588 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 764153 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 820781 19899672 ~ 19956730 (-)

Expression


Co-expression Network