sept9b (sept9b,LOC107754867,LOC107566422,LOC107561033,LOC107718712,LOC107674495)


Basic Information

Item Value
gene id sept9b
gene name sept9b,LOC107754867,LOC107566422,LOC107561033,LOC107718712,LOC107674495
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10296004 ~ 10335041 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241894.1
gagcgACTTAACTCTCGGAAAAAGCAAAAGGGGAAGTCTGCAAATAaagggagaggaggagaaacGTTAGAAACCACATGTGGCTGTTAGGAGCCATAATCCAGCTATGGAGCGAGACAGAATCGCTGCCCTAAAACGCTCATTTGAAGTGGAAGATGTGGACTCTTCCTCACACTCTTCATCGCCTCATACACGGCGAGCGCCATCCAATGTTCAGAGATCGGCCATGTCCCCGACCAGCGGAAGGTATTATGAGCTGGGCTCCAATGGCACCAAGCCCCCTGACACCTCAAAGCCCAAAGCCCGAACGCCTGAACCGGTGTCTCGTAGGACAGAGCTAGGCTTTGACATCTCATCAAACAACAATGGCAAAGCTATTGAAGGCTCTCCCAGTCCTGGCACGGCTCGGTTTGGGCTAAGGAGGCCAGATGTCTTAAGCCACAGTAAGACACCTGAGACGCAGAAGCACACGGTCACCTTTAGCAAGACACTGGAGACTATTGCGCCCATCACTCGTGCTGCATCTACCATTGTTCCTCATGCCAGTGCAAAACTTCCAGAGACCACCTTCAGGAAAAGCGAGCCACCAAGCCCTGCAGATGGATCAGCAAGAAAGCCTGAAATCAGTGTCACCAAATCAACAGACACCAGAGGTCATGACAGTCTTCACCATCCACCAGTTACAACAAGGTGTCCATCACCTAATCATGTTGGACGGAAATCCCCAAGTTCTGACGGGCATCGGCCAGAGGTCATTACAAGTTTTTACGGCAGTATGGCAGATGTAGGAAAGACCCCCGTGACACGCAATGAGAAGACTAACAGTGACTTTGGCTATGTGGGCATTGATGCCATCTTGGAACAGATGAGAAGGAAAGCCATGAAACAAGGCTTCGAGTTTAACATCATGGTAGTGGgtCAGAGTGGTCTGGGAAAATCCACGTTGATGAACACACTTTTTAAATCTAAAGTTAGTCGCAGATCTTTGATGACAACAGAGGAAGAGCGAATTCCCAAGACAATTGAGATCAAGTCCATCAGTCATGATATTGAGGAGAAAGGAGTGAGAATGAAGCTAACTGTCATTGACACTCCAGGTTTCGGAGACCAGATAAACAATGAGAACTGCTGGCAGCCCATCATGAAGTTCATTAATGCACAGTATGAGCAGTATTTACAGGAAGAGATCAACATCGAAAGGAAGAAGAGGATTCCAGACTCACGAATCCACtgctgcatatattttattcctCCTACTGGACACTGTTTGCGGCCAATTGACATTGAATTTATGAGACACCTGAGTAAAGTGGTAAACATCGTTCCTGTTATCGCCAAGGCAGACACACTCACCCTGGAGGAGAGGGACTTCTTCAAAAAGAAGaTAAGAGAGGACTTGCGAGCCAATGAAATCGACATCTATCCTCAAAAGGAGTTTGATGAGGATGCAGAGGACAGAATTATTAATGAGAAGATCAGGGAGATGATCCCATTTGCTGTGGTGGGAAGCGATCAAGAATATCAGGTCAATGGAAAAAGACTTCTGGGCAGGAAAACAAGATGGGGGACAGTAGAAGttgaGAACACTGCACACTGTGAGTTTGCCTACTTGAGGGACCTGCTCATCAGAACTCATATGCAGAACATCAAAGATATCACAAGCAGCATCCATTACGAAATGTACCGTGTACGCAGACTCAATGAGAATAACACACAGGCAAACGGGCAGCCAGCAATCCACTCCAACGGCGTACCTGAGCACGAGGTCCTCTCTCATGAAATGTAAAGTCCTGACCATGCACCCGTCCATCATTCAGTCCGTccagctttttttccccttcaaatCCTCACTTTTCAATAATATCTTCCTCCGTTCATTCTGACTGGCTGCGTCTGctgactgttgttttttttaacaccaaaaaaatataacagaTCTGCGGAAAATGAATCTTTGAGCGTGTAGAAAAAATGTGATGTTCTGTCTGTAATGAGAGTTTTATTAAAGATGTGTtacta
>XM_043241896.1
ATGAGTGCTGCTTGGCTGTTCTGTGGTCACGTGACCCTGTAGTGGGCGTGGCTGTGAGTCCAGCTGGTGTTGCAGGCTGACTCAGGCACAGAGAAAgagggacagaaagagagataaagAAAGACAGCAAGAGCTACTAAAGGAAGGGGCCAGAGGTCATTACAAGTTTTTACGGCAGTATGGCAGATGTAGGAAAGACCCCCGTGACACGCAATGAGAAGACTAACAGTGACTTTGGCTATGTGGGCATTGATGCCATCTTGGAACAGATGAGAAGGAAAGCCATGAAACAAGGCTTCGAGTTTAACATCATGGTAGTGGgtCAGAGTGGTCTGGGAAAATCCACGTTGATGAACACACTTTTTAAATCTAAAGTTAGTCGCAGATCTTTGATGACAACAGAGGAAGAGCGAATTCCCAAGACAATTGAGATCAAGTCCATCAGTCATGATATTGAGGAGAAAGGAGTGAGAATGAAGCTAACTGTCATTGACACTCCAGGTTTCGGAGACCAGATAAACAATGAGAACTGCTGGCAGCCCATCATGAAGTTCATTAATGCACAGTATGAGCAGTATTTACAGGAAGAGATCAACATCGAAAGGAAGAAGAGGATTCCAGACTCACGAATCCACtgctgcatatattttattcctCCTACTGGACACTGTTTGCGGCCAATTGACATTGAATTTATGAGACACCTGAGTAAAGTGGTAAACATCGTTCCTGTTATCGCCAAGGCAGACACACTCACCCTGGAGGAGAGGGACTTCTTCAAAAAGAAGaTAAGAGAGGACTTGCGAGCCAATGAAATCGACATCTATCCTCAAAAGGAGTTTGATGAGGATGCAGAGGACAGAATTATTAATGAGAAGATCAGGGAGATGATCCCATTTGCTGTGGTGGGAAGCGATCAAGAATATCAGGTCAATGGAAAAAGACTTCTGGGCAGGAAAACAAGATGGGGGACAGTAGAAGttgaGAACACTGCACACTGTGAGTTTGCCTACTTGAGGGACCTGCTCATCAGAACTCATATGCAGAACATCAAAGATATCACAAGCAGCATCCATTACGAAATGTACCGTGTACGCAGACTCAATGAGAATAACACACAGGCAAACGGGCAGCCAGCAATCCACTCCAACGGCGTACCTGAGCACGAGGTCCTCTCTCATGAAATGTAAAGTCCTGACCATGCACCCGTCCATCATTCAGTCCGTccagctttttttccccttcaaatCCTCACTTTTCAATAATATCTTCCTCCGTTCATTCTGACTGGCTGCGTCTGctgactgttgttttttttaacaccaaaaaaatataacagaTCTGCGGAAAATGAATCTTTGAGCGTGTAGAAAAAATGTGATGTTCTGTCTGTAATGAGAGTTTTATTAAAGATGTGTtacta
>XM_043241897.1
agCAACCTTGTCCCCTCCCACTTTCACATTGACTTATATGTCACTTGCTTTCTGTCACACATTTTTCAAGCTACGGAATCATCAAATTCAACGACTTTGCGGACTTAATACCCTCTTTTGGGGCCAGAGGTCATTACAAGTTTTTACGGCAGTATGGCAGATGTAGGAAAGACCCCCGTGACACGCAATGAGAAGACTAACAGTGACTTTGGCTATGTGGGCATTGATGCCATCTTGGAACAGATGAGAAGGAAAGCCATGAAACAAGGCTTCGAGTTTAACATCATGGTAGTGGgtCAGAGTGGTCTGGGAAAATCCACGTTGATGAACACACTTTTTAAATCTAAAGTTAGTCGCAGATCTTTGATGACAACAGAGGAAGAGCGAATTCCCAAGACAATTGAGATCAAGTCCATCAGTCATGATATTGAGGAGAAAGGAGTGAGAATGAAGCTAACTGTCATTGACACTCCAGGTTTCGGAGACCAGATAAACAATGAGAACTGCTGGCAGCCCATCATGAAGTTCATTAATGCACAGTATGAGCAGTATTTACAGGAAGAGATCAACATCGAAAGGAAGAAGAGGATTCCAGACTCACGAATCCACtgctgcatatattttattcctCCTACTGGACACTGTTTGCGGCCAATTGACATTGAATTTATGAGACACCTGAGTAAAGTGGTAAACATCGTTCCTGTTATCGCCAAGGCAGACACACTCACCCTGGAGGAGAGGGACTTCTTCAAAAAGAAGaTAAGAGAGGACTTGCGAGCCAATGAAATCGACATCTATCCTCAAAAGGAGTTTGATGAGGATGCAGAGGACAGAATTATTAATGAGAAGATCAGGGAGATGATCCCATTTGCTGTGGTGGGAAGCGATCAAGAATATCAGGTCAATGGAAAAAGACTTCTGGGCAGGAAAACAAGATGGGGGACAGTAGAAGttgaGAACACTGCACACTGTGAGTTTGCCTACTTGAGGGACCTGCTCATCAGAACTCATATGCAGAACATCAAAGATATCACAAGCAGCATCCATTACGAAATGTACCGTGTACGCAGACTCAATGAGAATAACACACAGGCAAACGGGCAGCCAGCAATCCACTCCAACGGCGTACCTGAGCACGAGGTCCTCTCTCATGAAATGTAAAGTCCTGACCATGCACCCGTCCATCATTCAGTCCGTccagctttttttccccttcaaatCCTCACTTTTCAATAATATCTTCCTCCGTTCATTCTGACTGGCTGCGTCTGctgactgttgttttttttaacaccaaaaaaatataacagaTCTGCGGAAAATGAATCTTTGAGCGTGTAGAAAAAATGTGATGTTCTGTCTGTAATGAGAGTTTTATTAAAGATGTGTtacta

Function

symbol description
sept9b Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization and cytoskeleton-dependent cytokinesis. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Human ortholog(s) of this gene implicated in brachial plexus neuritis. Orthologous to human SEPTIN9 (septin 9).

NR:

description
PREDICTED: neuronal-specific septin-3-like isoform X1

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16938 SEPT3_9_12; septin 3/9/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241894.1 True 2019 mRNA 0.46 12 10296004 10335041
XM_043241896.1 False 1423 mRNA 0.44 10 10296004 10315469
XM_043241897.1 False 1397 mRNA 0.43 10 10296004 10307681

Neighbor

gene id symbol gene type direction distance location
rhbdl3 rhbdl3,LOC107718708,LOC107701837,LOC107698683,LOC107591910,LOC107754871 coding downstream 93248 10167236 ~ 10202756 (-)
znf207b znf207b,LOC107669543,LOC107710013,LOC107553300 coding downstream 143940 10146224 ~ 10152064 (-)
tefm tefm,LOC107591914 coding downstream 169263 10123815 ~ 10126741 (-)
utp6 utp6,LOC107710019 coding downstream 189196 10101483 ~ 10106808 (-)
trim25 trim25,LOC107710025,LOC107553309,LOC107669536 coding downstream 247136 10039427 ~ 10048868 (-)
zgc:174863 NA coding upstream 42290 10377331 ~ 10384083 (-)
jpt1a LOC107728178,LOC107659861,LOC107733897,LOC107561029,LOC107573532 coding upstream 55006 10390047 ~ 10394216 (-)
sumo2a LOC107573531,LOC107733894,LOC107704011,LOC106574529 coding upstream 60132 10395173 ~ 10398631 (-)
gga3a gga3,LOC107704010,LOC107573533,LOC107733910,LOC107659859 coding upstream 64304 10399345 ~ 10406457 (-)
mif4gda mif4gda,LOC107728181,LOC107561027,LOC107659858 coding upstream 73867 10408908 ~ 10411264 (-)
G44168 NA non-coding downstream 53495 10242210 ~ 10242509 (-)
G44167 NA non-coding downstream 57386 10238419 ~ 10238618 (-)
G44105 NA non-coding downstream 197825 10097980 ~ 10098179 (-)
G44095 NA non-coding downstream 211729 10083990 ~ 10084275 (-)
G44065 cbx4,LOC107710010,LOC107669529,LOC107553295 non-coding downstream 277936 10013936 ~ 10018068 (-)
G44208 NA non-coding upstream 37599 10372640 ~ 10372852 (-)
G44209 NA non-coding upstream 38129 10373170 ~ 10373568 (-)
G44210 NA non-coding upstream 41099 10376140 ~ 10376578 (-)
G44213 NA non-coding upstream 53003 10388044 ~ 10388442 (-)
G44338 NA non-coding upstream 246368 10581409 ~ 10582029 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other downstream 52579 10204617 ~ 10243425 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other downstream 150836 10138905 ~ 10145168 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 268324 10025453 ~ 10027680 (-)
anapc11 anapc11,LOC107553313 other downstream 347016 9945667 ~ 9948988 (-)
G43900 NA other downstream 1023699 9271418 ~ 9272305 (-)
LOC122347367 NA other upstream 20836 10355877 ~ 10358850 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other upstream 99163 10434204 ~ 10509003 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 243948 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other upstream 375004 10710045 ~ 10716741 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other upstream 613651 10948692 ~ 10985132 (-)

Expression


Co-expression Network