LOC122346973 (LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625)


Basic Information

Item Value
gene id LOC122346973
gene name LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16676285 ~ 16683433 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241907.1
agaaaagcaaaccCGTCGCAAATGGTAAGTTGTGggttttttgttgtcattttttttttttccctgattgCCATGACAACGACATGCTGTTTTTGGCACATAAATTTCCCCTCATTCATCTGTTTGTCTTTGCCTGCAGAGCCAAGACATTGTCGGCATCAAAATAACTTCGCTTTGTCAAATATTTGTGTGGAAAATCCTCTCTAGTCTCGTATGTGGCCCGTGTTTGTCGTCACTGAGAGACTGTCACAAGCTAATGAGAATTCTTACTCTTCCGTGAGTAAGTGTTGAAACTATTTGAGTTTAACAAGCTGGAAATAACTATGCCACATCAAATGCCTTCAAGAGTTTCGTAAAATCACATTTGATTAGAGCCAGAGTAATATACAGCTTTTATTGTAAACAGTTTTGAATGGCCTAAATTGAAGCTGAAGTTGAAATAGAGCACCGTGTCAGGGTTGCTTTTGTTGGCAAATTGCAAATCTTTCCATCTTTGTCAGTCTCCCTCTCTTCAGTCACtcttttaaaaggtaaaaactttgtgttttgttttttttttttaacattgtgaTGTCCATTGGCCTATAAATACTATTCGAGTTGCATGTATGAGCATTAATATACTGTTTTGTCAGCtgcaaacaataaattatgctcTCTTTGTTACTCAAATGCCAACCATGAAATAATGGTTCTGAGTGGACCAAAGCATGTTTGAGAACTGCAACGCTGCAGAACAGCCGAAGCTGAGCTTTCGACAGGCGGGCAGCAGCACCTCCACAGACACATCTGCGGGATCAAAGACGGGAGGCAGCCAACGCTTTCAGAACGCTTTCAACTTGGGCAAAGCCATGGGAGCCAAGGTAAACGACCTGCTTCGACGAAAAGATCCCAGCAGCCTCGGAGACATCGGAGTCACAGAGGTGAACAAGAACGTGGAGCCAGTGTGGTCCAGCCTGGCTGAGATGGGCCACACTACAGCAAGAAACAGtCACATCTCCTTGGATTCCTTCCCTCGGCTGGATCCCCCACCTCCCACCGGCAAAAAGCGTCTCCCACGGGCCCTGAAGACCACCCAGGACATGATGATATCTTCTGACCCCGTGGTAGCCTCCCCAGAATCCTCCTTCGTCTCCTCACCTGACAAGATCTCCAAAGATAAAGCTGAGCTTCAGCCTGAAGAGTCCGGCCCTGAGAAACCTTCAGGACCCGGCGACCGTGTCGACAGCCAGATGGAGAAGACGCCTGGTTCAGAACTAAAAAACGAGCCCACAGCTGTGGTGACGGATGAGAAAGATTCAGAGGAAGTCGATCAGTCACAGCTGCTGCTCTCTGTTCCAGATCTCATTCACAAAGACAATCTGGACCCAAAGAAACTGGCCAGCTCGGAAACTAGAATGGCTTCCACCCCGTGTCCAGGGAAAGGGGGCTGCCGCATCAGCGTCACTGAGGGGGAATTGTTGGGGAATGGCACGGCGGATTACCGGACCGTCAGCCTGGAGAACGAAGAATCCCACCCCGACCTGCTGTCATTCGAATAACAGGCTTGAGACCCTCAAGATCATTGATTCTCCAGGCTTCTGCGATGACAAAAACTGCTTTCATTCTGCATTTCATATTTTGCCTTTAAGTACCGCTGATTGTACTTAGTTATTTCATAgatataattattcaaatgataaaaatcactgttgttttttgtttttaatcgtAGCACCATAATCAATTTAAAAgattgtattttaaagtatttgtgGACctgtaacaaacaaaacatgatgAATCAATTAACAGAAGCCAAAGTCAATAGTACACTGCAAAAAGGagttttaattagtatttctTGGCTTTTTTTCCAGTCAAATATTCCAGTAGAACTTCAAATGAATTAGCTTGAAGCAACACTACTGCAAAAGAATATTAAGGCTTATTCTCATTATAGCATAAATATTAGTGAATTTTGTATTTCCTACTGCACTGAAAGATTGTTTCACTCAATTTAACtataaaaaatgactaataatgatacaaaagattttgaattcacataaatgctgttctaaTGAATTTcaaatcaaagaatcctgacaCAAATGCATTCAGGATCAGCATATATCTGCAttttagactgatttctgaaggatcatggaATAATGGctgttaaaaatttattttatatataatatatatatatatcagtttctttttttttattaaatatttcaaagcatttGGTCAATTAATTGCAGCATTgtagttttaatgtattttacttttacattttgtatgtaaagagtatgtaaatgtgtttttggtttgaaGGATTTTTAGACTATTTTACTGGgaaaatagccaaaaatattcattaagaATAGAATTTTTCAGTGTTATTGTTATACCTCTAAAGCTGTCTTTGCAGTTCCGCAAGTACCATTTCAAGTcttatgtgttgtttttttttttgttgttgttgtttttttttatagtttcataTCAATTCTACATCCATGGCTAGCTGACCACATCTCTTAGCTTGTGCTCTGTGGCAGTATAAGCGAGCGCACATGACCTTGGGTCAGTCTATAAAGCGTTATGCACCTAACAGCAGCAGTATGGGCTCCTTCCAAGTTATTTTTGACACTATGTGACCTCCAGATCAACTTTCCCAGTCTGATGGAGAAAGTCTAGGATCCTACCTTTGTAGGCAGTGTCATAGTGATAATAGTCAAGGTGATGATGGCTCGAGGAATGCCAGTAATGAGGCTCAGTCAACATGAAGGTATGCAGAAGGGTTCTGAAATTTCCTGGAATGCTATAACTCAACACTAATCTGGACTCTCGTCCTCTTGTTTGTGTAGACAGCCTGACTCCCATGACATTCTCTCAGGCCTGTTCTTTATCCCACACAGAGATTTTGAGCTATTCCGATGCTAACAATGCCACTATTTTCACTCCTGTTATTTAAAGAGATATACTGTCATTCTGCATATATGTATAGATGTACTGAGATGTTGATTGTAAGTCAAAGCTGGGAAGAAATGGCTGATATGCGTTAATGAAATTGACTTTGTATGTATTGGCAATATAGCATTAATTAATATCTGAGCTTCCGTACCATGTTTTGGTTACACTACCTTTGTGATACCAATAGTGCAATGATGCATAATTCATAACACTACAATGAGAACTGAGAGTAAAGTAAATTCATGCAGATACGTTAACAGTTGATGAATTAATGTGGACCACTGATACTGTGTAACTGGACCGTAAGATATGAAGTGTTTTATGACGTGACTGTGTATATGTGCTGGTGAGACTACAGCCGAATGAATGAAAGGAAGGaatatttatcttttgtttAGCTTTTAAAGACACTCTTTAAAGTTGAGAAGATGCTTGGTGggaacttaaaggaatagtttacccaaaaaattCAAATTGGCTGAAATTCCACTCAGCCTCAGGCCATTCGAgatgtaatgctgaatttctttaaatctctttcaataaagaaaaatactCATCTTAATCTTAGATGGTCTgtgggtgagtacattttttagcaaatttatatttttgggtgaattattaatttaacgTTGAATGTCGAAtcttatttcttctttttttttctctgtgtgatGATTCGTGTATATTAATTTCAATCAAAGCGGTCCCATCATTGTCACGGTTTGTTTGAATGAAGAAAAACGAATGTTGAAGGAAAAACGCATGTATATGAAGGTTTTATGACTGCACTGAAATGTATTTCGAGAAGCTGGGTATATTAAAGTGATTTCCCATTA

Function

NR:

description
PREDICTED: carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241907.1 True 3806 mRNA 0.39 3 16676285 16683433

Neighbor

gene id symbol gene type direction distance location
uap1 uap1,LOC107724142,LOC107551035,LOC107692418 coding downstream 16552 16649465 ~ 16659733 (-)
ddr2a ddr2,ddr2a,LOC107724144,LOC107551036,LOC107594601 coding downstream 28670 16618572 ~ 16647615 (-)
hsd17b7 hsd17b7,LOC107551038,LOC107758362,LOC107692446,LOC107724130 coding downstream 59086 16610280 ~ 16617199 (-)
serbp1a LOC107594603,LOC107692416,LOC107758366,LOC107724138 coding downstream 66622 16603295 ~ 16609663 (-)
slc35d1a slc35d1a,LOC107724140,LOC107551012,LOC107684099,LOC107758361,LOC107594604,LOC107692433,LOC108441641 coding downstream 98222 16571144 ~ 16578063 (-)
nos1apa nos1ap,LOC107711121,LOC107594625 coding upstream 3945 16687378 ~ 16764274 (-)
rgs5a rgs5a,LOC107684230,LOC107732440,LOC107564083,LOC107685321,LOC108441543 coding upstream 105244 16788677 ~ 16796152 (-)
rgs16 rgs16,LOC107684360,LOC107711030,LOC107551031,LOC107732438,LOC107564088,LOC107685341 coding upstream 124178 16807611 ~ 16809797 (-)
brinp3a.1 brinp3a.1,LOC107585174,LOC107711117,LOC107732447,LOC107685317,LOC107564080 coding upstream 215252 16898685 ~ 16926368 (-)
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding upstream 534554 17217987 ~ 17224910 (-)
G45770 NA non-coding downstream 353480 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 405177 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 406893 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 408743 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 557699 15902216 ~ 16118586 (-)
G45897 NA non-coding upstream 504023 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 831205 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1124188 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1139103 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 1356931 18040364 ~ 18044630 (-)
fam183a fam183a,LOC107551015 other downstream 312265 16361167 ~ 16364020 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 615819 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 616518 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 911178 15756309 ~ 15765107 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 1070815 15603910 ~ 15605470 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 133207 16816640 ~ 16830261 (-)
G45895 NA other upstream 503256 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 552357 17235790 ~ 17246386 (-)
G45910 NA other upstream 624382 17307815 ~ 17308478 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other upstream 698894 17382327 ~ 17414139 (-)

Expression


Co-expression Network