nit2 (nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305)


Basic Information

Item Value
gene id nit2
gene name nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18079634 ~ 18083673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241953.1
tgaatgtattttagtgGGCGGAGATTGTCCTACATTACTATCACTGTAACACTACTGTGCGTATTCCAAGCAGTATATCAATGTCTGGTATCTTTAAAGCAATGTCGAAGTTTCGTCTGGCTGTGGTGCAGTTACATGTGTCAAAGATTAAGGCGGACAACTTGGGAAGGGCAAAAAAACTTGTGAAGGAGGCTGCAGAACAAGGAGCAAAAGTTGTAGTCTTACCTGAGTGCTTCAACTCTCCTTATGGAACTGGGTTCTTTGCCGAGTATGCTGAGAAGATCCCAGGAGAATCCACACAGGTGTTGTCGGAGGCAGCCAAGGACTGTGGGGTCTATTTAGTTGGCGGTTCCATTCCTGAGAAGGATGGAGAAAAGCTCTTTAACACCTGCTTAGTTTTCGGACCTGATGGAAAGCTGCTTGTCAAACACAGGAAAATTCATCTTTTTGATATTGATGTACCCGGGAAAATACGGTTTCAGGAGTCTGAAACACTAAGTCCTGGAAACAGTTTATCCATGTTTGAAACACCGTTTTGTAAAGTAGGTGTGGGAATATGTTATGACATCAGGTTTGCAGAGCTGGCACAGATCTATGCTAAGAAAGGTTGCCAGCTTTTGGTATATCCTGGTGCCTTTAATATGACCACAGGTCCAGCTCATTGGGAGCTTCTGCAAAGGGGGAGGGCAGTAGATAATCAGGTATATGTGGCCACTGCTTCACCAGCAAGAGACGAGAGCGCCAGCTACGTGGCCTGGGGTCACAGCACTGTGGTTAACCCTTGGGGGGAGGTAATTGCTAAAGCTGAATCAGAGGAATCCGTTTTATATGCTGAAATAgACCTGCAGTATTTGGCTGATGTGCGCCAACAGATCCCAATCACCACACAGCGACGGAACGATCTATACAGTGTTAACAGCGTTCAGGAGGGCTGAACTTTCATTCACACAAAGCACTGCAGTGGACATTAAGTCTTGATTAAAGACTGACTGAGTCAACACTTTGTGTTAGACCAGTCAGTGTAAAGTGGGGCATCTCACAAAGAGGTTTTAATCACTGTGAATAAGTGCCTCGCGATTTGTGTTCTTTTGATGATTCTGTCACAGTGCAAATGATGTTTGGAATAGATAAAACAAGTGTTGAGAACAATGGACAGTTACGCCTGGGCAGGTGAAGTTCTCCATCAGCTTgagaaaaaacattaagcatGATAACaggatattaatatttaaagtgattcccaaatcaaaattattttcattgcaaTTGCATTAATTCCAATAgagattaaaatattatatgaaaaacatttactccattttctttttttctctccaccgATTAAGTCATTTCAAATACATAAGACAGTTCCCAGCAGAAACCAATTGCAGAACACcagagcttgtgtgtgtgtgtgtgtgtgtgtagatatacgtgctgtcaaatgattagaataaaggtttttgtttacatgtattacatgtatatacatttatagagttacaatttctattatttataaatgcatgtgtttgaatttatatatatatatatatacagaatcatgattaatcgtttgacagcactaatatatatatgaaacttTTAGGATTAATTAGGAAGTAATGTGGATTACCATAGAGCAAAGACATTTTGTGTCccttagattttttatttacaatgacTTTGATACAATTAAACTATTACACAGCGAATATAAAACACAAGTTGGTTTATATAAGAAAATGTGTGTCTTTTTGCCACATTCAGTGCTgttgaatatatttgaatttctcAACAGCACGTCTTAACTGATAGCAGACAGTATGACTAACAGTAACTCATCTGCGTTTGTGCTCCAGCCTGTCTAACTACTTCAGGTTGGACAGGTGAAGTTCTGGCAGTTGTTTTGAGCTCTTTCTCAATGACATAGCATGTTGGGGATATTTACTGTGGTCTAAAAATGTAGACGTTTAAAATGGTACAGCAAGAGTGTCAAAATACAGTTTATCTCTGTATTTTGAATATAGATATGTTCATACTCTTTGAGCTGCTTTATTCTATTGTGCTGAGTTGCAAGTCTTTTGTTTAGCCGACTGTATGGGaaaaaagaagtcttttatCTTTGTGTTTGTCTATTATCTTAAGCCGATTCATAATCTAAAATTAAACTTTGAATCACTTCCAGTCAATCACAATTAA

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
omega-amidase NIT2

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241953.1 True 2202 mRNA 0.38 10 18079634 18083673

Neighbor

gene id symbol gene type direction distance location
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 18749 18045653 ~ 18060885 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 39281 18028054 ~ 18040353 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding downstream 55592 18015238 ~ 18024042 (-)
LOC122347583 LOC107711009 coding downstream 82895 17993970 ~ 17996739 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 409791 17668187 ~ 17669843 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding upstream 4387 18088060 ~ 18090531 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding upstream 7442 18091115 ~ 18096535 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding upstream 16191 18099864 ~ 18109115 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding upstream 26973 18110646 ~ 18116377 (-)
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding upstream 70876 18154549 ~ 18155965 (-)
LOC122346732 nit2 non-coding downstream 12685 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 35004 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 256899 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 271519 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 561029 17514638 ~ 17518605 (-)
G46074 NA non-coding upstream 13395 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 33683 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 166261 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 249170 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 276006 18359679 ~ 18359981 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 305527 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 665495 17382327 ~ 17414139 (-)
G45910 NA other downstream 771156 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 833248 17235790 ~ 17246386 (-)
G45895 NA other downstream 892316 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 560633 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 622950 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 630501 18714174 ~ 18717488 (-)
G46478 NA other upstream 971473 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1031388 19115061 ~ 19149731 (-)

Expression


Co-expression Network