nprl2 (nprl2)


Basic Information

Item Value
gene id nprl2
gene name nprl2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8496635 ~ 8501268 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241959.1
TCaatagaagaagaagagaagcactcactgaaaaaaagaaaagaaaatatcgCTCAACATTATCGAGTTGGTGCTGAACATGGGTACATACAGACGAATAGattgtatattttttagtgAATTTCATCCAACTTTAGGACCAAAGATCACATATCAGGTTCCTGAAGAATATATTTCGAGGGAACTTTTTGATACTGTGCAGGTGTACATCATCACCAAACCTGAACTGCAAAACAAGCTTATAACAGTGACTGCAATGGAGAAGAAACTAATAGGTTGTCCAGTGTGCATTGAGCATAAGAAGTACAGCCGGAATGCCTTGCTCTTCAAtttgggattagtctgtgatgcCAGGACAAAAACATGCGCTTTAGAACCTATTGTCAAAAAACTGTCTGGCTACCTCACAACTCTGGAgCTTGAGAGTGGATTCATTTCAAACGAGGAGAGTAAACAGAAGCTATTACCTATCCTGTCCACACTTCTGGAGGAACTTAATGTTACAGGAGCCTGCACCCTGCCTATTGATGACTCGAACACCATCCACTTGAAGCTCATTGAACAAAGGAAAGATCCTCTGGTGGTTCAGGAGTATGACGTGCCGGTATTTACCAAGAATAAGGACCACTTTATAAAGTCACAGTGGGATCTCACCACGCAACAGatcTTACCTTTTGTAGATGGGTATCGACACATTCAAAAGATCTCAGCTGAGGCCGACGTTGAGCTTAATTTGGTTCGGATTGCTGTTCAGAATTTATTGTATTATGAAGTAGTAACTCTGGTGTCCATATTCCAGTACTCAAATGTTTACTGCACAACACCTAAAGTACAAAACCTAATAGATAAGAAGTGCCTTCAGGAAGAGTGTATACATTACGTCAGTAAGCTGGGCCAAAGGACAAATCTCAGGGACGTCTTCCAGTTGTACTGTGGTCTGACCCCAGGTACGACTGTACGTGACCTCTGTTCCCGCTATTCTCACCAGTTACAGAGAGTTGATGAAAGGAAGTTGATTCAGTTTGGATTGATGAAAGGTTTGATTCGACGCCTACAGAAATATCCAGTCAAGGTTGTGAGAGATGAGAAGAGTCGTCCACCTAGACTTTATACTGGCTGCCATAGTTACGATGAAATCTGCTGCAAAACTGGAATGAGTTATAAGGAGTTGGATGAACGCTTGGAGAATGACCCTAACATTGTTGTTTGCTGGAAGTAATGATGCAGACAGAATTATATGAAAGAACTTATAGTGCTTCTGCAGGCTCAGGCTTTTTCTTctgtatcttttatttattgtaaaacaacTGTCCTTTTATGTATATCTTTGAAAGCATTATAGGTCAAAATATgaacacaaatttaaaaaataaaaatactgcaatggATTTTTAGATCAACAGGGTTATCTTAATTCATGACTTTTAAAGTATTtagcatttactgtaaaattaggcttacaattaacaataaaaagaatttGAAACTGTTGAAAGTTTTTGCTTTTCTGATCATTTGTAATCTGCAGTTGTACAAATATGATGATTCGCTTACATCAAATAACATGGCGGTTTTAAGTAAAATGATGGGAAAATTGgaagaggaaatattttaaacagcTGTCATTTACCTTGTCATCCTTTAAatccattcagtttttttcctgtaaatagGAAAGGTGTTTAAGAATCGCTGAAGAATAAAGGAAATCAAAAAACCAA

Function

symbol description
nprl2 Predicted to be involved in several processes, including cellular response to starvation; negative regulation of TOR signaling; and regulation of autophagosome assembly. Predicted to be part of GATOR1 complex. Human ortholog(s) of this gene implicated in focal epilepsy. Orthologous to human NPRL2 (NPR2 like, GATOR1 complex subunit).

NR:

description
Tumor suppressor candidate 4

GO: NA

KEGG:

id description
K20405 NPRL2; nitrogen permease regulator 2-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241959.1 True 1721 mRNA 0.38 11 8496635 8501268

Neighbor

gene id symbol gene type direction distance location
gga1 gga1,LOC107712552,LOC107656124,LOC107586353,LOC107710174,LOC107691488 coding downstream 16799 8466738 ~ 8479836 (-)
cfap100 cfap100,LOC107562886,LOC107691496 coding downstream 57250 8431444 ~ 8439385 (-)
plxnb1b LOC107755667,LOC107586348,LOC107656121,LOC107691484 coding downstream 78865 8381140 ~ 8417770 (-)
si:dkey-19e4.5 si:dkey-19e4.5,LOC107586347,LOC107562898,LOC107710172,LOC103025619,LOC108427613,LOC108272187 coding downstream 117594 8374812 ~ 8379041 (-)
setd5 LOC107710169,LOC107716898,LOC107656119 coding downstream 121960 8346761 ~ 8374675 (-)
LOC122346602 NA coding upstream 5500 8506768 ~ 8524993 (-)
si:dkey-45d16.4 si:dkey-45d16.4,LOC107681484,LOC107569613,LOC107711600,LOC108424794,LOC103024355,LOC108273264 coding upstream 46010 8547278 ~ 8549239 (-)
ube2o ube2o,LOC100331775 coding upstream 356266 8857534 ~ 8883164 (-)
LOC122347059 rhbdf2 coding upstream 385240 8886508 ~ 8932433 (-)
acox1 acox1 coding upstream 431815 8933083 ~ 8951173 (-)
G43734 NA non-coding downstream 2 8495764 ~ 8496633 (-)
G43719 LOC108424762,LOC107710154,LOC107562891,LOC556764 non-coding downstream 29989 8460906 ~ 8466646 (-)
G43710 NA non-coding downstream 41772 8454131 ~ 8454863 (-)
G43712 NA non-coding downstream 44316 8450787 ~ 8452319 (-)
G43709 NA non-coding downstream 45949 8449138 ~ 8450686 (-)
G43739 NA non-coding upstream 45085 8546353 ~ 8546563 (-)
G43791 NA non-coding upstream 98528 8599796 ~ 8794740 (-)
G43800 NA non-coding upstream 205518 8706786 ~ 8707974 (-)
G43855 NA non-coding upstream 521251 9022519 ~ 9022881 (-)
G43856 NA non-coding upstream 523940 9025208 ~ 9025429 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 448627 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 726184 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 910268 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 1167070 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 1181861 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 207438 8708706 ~ 8713858 (-)
G43890 NA other upstream 759348 9260616 ~ 9261245 (-)
G43896 NA other upstream 764734 9266002 ~ 9267324 (-)
G43899 NA other upstream 767920 9269188 ~ 9270922 (-)
G43900 NA other upstream 770150 9271418 ~ 9272305 (-)

Expression


Co-expression Network