arl8ba (arl8ba,arl8b,LOC107095653,LOC107552649,LOC105934196,LOC103137213,LOC107667033,LOC103362565,LOC104920499)


Basic Information

Item Value
gene id arl8ba
gene name arl8ba,arl8b,LOC107095653,LOC107552649,LOC105934196,LOC103137213,LOC107667033,LOC103362565,LOC104920499
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 21153824 ~ 21161171 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242019.1
ACAAGCGGGTCAGTTCCTCCCAAACACTACGTTACGATTCTAGTGGTGAAAAACATTGCAAACAACCATAACCTAAACAGACCTGTTTAATCCGGCATCAAAATGTTGGCCCTCATTAACCGCCTCTTGGACTGGTTTAAGTCTCTCTTCTGGAAGGAAGAAATGGAGTTAACCCTCGTCGGGCTGCAGTATTCGGGGAAAACGACGTTTGTTAACGTAATCGCGTCAGGCCAGTTCAGCGAAGACATGATTCCAACTGTCGGGTTCAACATGAGGAAGGTCACAAAAGGCAATGTCACCATCAAGATCTGGGATATAGGAGGTCAGCCGAGGTTCAGGAGCATGTGGGAGCGATACTGTCGTGGGGTGAACGCAATAGTgTACATGGTGGACGCAGCAGACCGGGAGAAGGTTGAAGCTTCCAGAAATGAGCTGCACAATCTTTTAGACAAGCCACAGTTACAAGGAATCCCTgtgttgGTGCTCGGGAATAAGAGAGATCTACCTAATGCTTTGGATGAGAAACAGctaattgaaaaaatGAACCTGGCTGCTATTCAAGATAGGGAGATCTGCTGCTACTCTATTTCCTGCAAAGAGAAAGATAACATTGACATTACACTTCAATGGCTAATCCAGCACTCAAAGTCAAGAAGAAGCTGAAAGTGTCTTCAGAAGGTCCAAGTTTATCCGCTGCCATGTTACTCTTACACCACATCTTGCTCACTTTGTGAAACTGTACAGTTCTCCATACCGCCCCCTCACACTACCCTGCTCGTCTGTTCCCATAATTCTTCACAAGCTCCTCCCAACTGCATCAGTCATGTCAAAGATACATCAGTCGCTAAAAGACGCTAGCCTGCAGAATGAGTTCCTCCACCTCTTACAGCCTGCTGTCAGATGAACATTATGGATTCATGGTTTTGCAAATCCCAGCAGCTCCGGTGATCTCCACTTGGGGTTTCCCcgaacaaatgtatttaaaaactgagAAGAGTTCAACTTTAATATCGTGTTCTGCCTTTTTCCTCCAGTCTGTCAGGTTATGCTCTTGAGAGCGTGTAATATTGTTGGGactgttgcttttattttttttcctttttctcttttcccccAAACTGTCTGTTGAGAAACCCGTAATCTTTAAATACGAGGAGCAGTCCAGTAAATAAACAGTTCAAATGATGATTCAGAGAGATTTTTACAGAAATGAGTGTAAGTATATTTGAGaggatgaatgttttgttgGTAAAGGTTTTCATTTAGCTCAATGATGTCTTTGCATCCAGTTCGTGAGCTGAGAGAGAGCGAGTAGGTGAAGTTAAAGTGCCTTGTGCAGTGTATCTGTCCCTCAAGATAAACAGTATACCGGGTGTGCCTGCCTGGAACTAGATTGGATAAAGACAGCTTACTTTGAACTGCAAGAACAGAAGGCACGCTTTTTAAGGTAGATTATTGTACTGTTGTCATTATCAACTAAATATTCGTGAAAAGAGGCAAATGTTGGAAACCCCACTATTATCAATGCACTTTTGTAAATATGATGAACCAATAAATAGATTGTCAACATATAGGAGGAA

Function

symbol description
arl8ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in autophagosome-lysosome fusion; late endosome to lysosome transport; and lysosome localization. Predicted to act upstream of or within cell division; chromosome segregation; and protein transport. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8B (ADP ribosylation factor like GTPase 8B).
arl8b Enables guanyl ribonucleotide binding activity and tubulin binding activity. Involved in several processes, including calcium ion regulated lysosome exocytosis; lysosomal transport; and vesicle fusion. Located in cytolytic granule membrane; midbody; and spindle midzone. Colocalizes with lysosomal membrane.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 8B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007059 chromosome segregation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005819 spindle cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242019.1 True 1580 mRNA 0.43 7 21153824 21161171

Neighbor

gene id symbol gene type direction distance location
edem1 edem1,LOC107750244,LOC107552651,LOC107657818,LOC107666987,LOC107713500,LOC107584463 coding downstream 667 21145665 ~ 21153157 (-)
ip6k2a ip6k2a,LOC107713495,LOC107666997,LOC107657877,LOC107750247,LOC107573738,LOC108436274 coding downstream 197617 20949489 ~ 20956207 (-)
sec61a1l sec61a1l,LOC108436273,LOC108440718,LOC107713494,LOC103023094,LOC103358725,LOC103036990,LOC107750248,LOC107657870 coding downstream 211925 20936075 ~ 20941899 (-)
emc3 emc3,LOC107667035,LOC107584459,LOC107657885,LOC107750250,LOC101173295 coding downstream 218631 20932061 ~ 20935193 (-)
usp4 usp4,LOC107584456,LOC107667006,LOC107573741,LOC107657902 coding downstream 222510 20918338 ~ 20931314 (-)
tnfrsf18 NA coding upstream 461 21161632 ~ 21164185 (-)
si:ch73-361p23.3 NA coding upstream 8916 21170087 ~ 21176003 (-)
glyctk glyctk,LOC107584466,LOC107713503,LOC107667023,LOC107750240,LOC107552647,LOC107657765 coding upstream 16457 21177628 ~ 21181849 (-)
lrrn1 lrrn1,LOC107713505,LOC107584468,LOC107667032,LOC107680720,LOC107750239 coding upstream 36334 21197505 ~ 21208363 (-)
avpr2b.1 si:dkey-178o16.4,LOC107599421,LOC107750238,LOC107584469,LOC107667040,LOC107713506 coding upstream 89233 21250404 ~ 21253571 (-)
LOC122347045 gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988 non-coding downstream 11058 21137473 ~ 21142766 (-)
G47004 NA non-coding downstream 218170 20935422 ~ 20935654 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding downstream 446975 20564351 ~ 20706849 (-)
G46922 NA non-coding downstream 461661 20498222 ~ 20692163 (-)
G47122 zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032 non-coding upstream 167261 21328432 ~ 21329671 (-)
G47262 LOC107573738,LOC107657877,LOC107713495,LOC107666997,LOC107750247,LOC108436274 non-coding upstream 441118 21602289 ~ 21663492 (-)
G47283 NA non-coding upstream 639107 21800278 ~ 21801032 (-)
G47297 NA non-coding upstream 843609 22004780 ~ 22004982 (-)
G47306 gxylt2,LOC107713518,LOC107666964,LOC107584478,LOC107732048,LOC107599434,LOC107680697 non-coding upstream 885939 22047110 ~ 22047735 (-)
G46926 NA other downstream 621990 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 987545 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 1051365 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 1153186 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 1197094 19899672 ~ 19956730 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 187448 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 1578801 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 1960612 23121783 ~ 23163157 (-)
G47590 NA other upstream 2238178 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 2492018 23653189 ~ 23656456 (-)

Expression


Co-expression Network