cbx8b (cbx8,cbx8b,LOC107710282,LOC107710028,LOC107553294,LOC107591932,LOC107669528)


Basic Information

Item Value
gene id cbx8b
gene name cbx8,cbx8b,LOC107710282,LOC107710028,LOC107553294,LOC107591932,LOC107669528
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10022614 ~ 10024882 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242031.1
AGTATTATGGGCTGTGTGGAATTCTGAAGCTAGAGCAGGCGGACCGGACTCGCGCTCACGGCTAGCTACGCTGCAAGCTAACGGTAGACGAAGGTAAACATGGAGCTGTCGGCTGTCGGAGAGAGGGTGTTCGCGGCCGAATCGATCATCAAGAGACGAATACGACGGGGTCGAATGGAATATCTTGTGAAATGGAAGGGCTGGTCACCCAAGTACAGTACTTGGGAACCGGAGGAAAATATCCTAGACTCACGCCTATTCGTTGCATTTGAAGAGAGGGAGCGCGAGAGAGAAATATTTGGACCCAAGAAAAGAGGACCTAAGCTCAAGACTTTTCTTCTAAAGGCCCAAGCTAAAGAAAAGGCAAAGTCTTACGAATTCCGTAACGAATCGTCCAGAGGCATTGCGTATCCCGGTTCAGAGCCTGTGGCAGCCCCTAGAGCGAGAGAAGGACTGCGTGCTGTGGTTCCCACAATTTTCCCTCCTAGCACAGTAAACCGAGGGGAGAGTGTAAGAATTTCACCTCCAGAACCAAGGGAGCATCGTTCTCCTCACTCACCCAGACCGGGCGCTGATGATTTTACCCTCACTCCAAAAAAGAGAGGACGAAAGCCCAAATTACGATTCACAGATGTCTATACAAGCTCCTTGCATCCAGAGCATTCGAAAAGAGCGGCAGATGAAACCATGGCAAGCATTCCTTCCAAAATGGCCAAGTTAGGTTtgggaggagaagaagaagagaggtgCTCAGAAATAAGCGGGAGAATTAAGATATCTCATAAGCACATGGATGCTACCTACACGCACAAGCAAAACAGGGCTGTCCCGAGCAGGAGCACCCAGCACATTTCTCCAGAGTGGAGCTTGCATTCCAGCAGAGTTAGTGCAGACTTACAGTGCCACAGGACTAATCCACAGACGAGCCACTTTCACCACAAACACCTGAAACACCTTTCAAAGAGAAGGACATTCGAACACGCCGACTCCACCGGCAGACAGCCTTCGCTTATTGCCAAAATTCCAGTGTCGCGCATATTTGGAGAGCCGGAGGAGGGAGACGCTTGGGCGCCCTCCTTCAGCAATGTGGAGAAAGTCATAGTTACTGACGTGACATCGAACTTCCTGACTGTAACCATCAAAGAGAGTAGCACAGATAAAGGCTTCTTTAAAGACAAAAGATGATTATTTCACTGCCGCCGGTATGCTCCTTCAGAAGTCTTTTATTGTCGAAAATATTCTGtgtattgtacaaaaaaaatggtcaCACTGAAATCTGTATTTATTGTGAAATTGCTGCTTTAAGAAAGTTGCATGCACTAGACACCATAAACAAAGTCAGAACTTCGTTCAAAATACATGAACGAGTACTCCGATCATTTGTTGTAAGTATTATTACAAACTGTTtacctataaatatataaaagtataatttgtCACCCAGGcgaatattaaaacatttatgtacagattaagacattttgcacactttttttgttttgcgcCATATCATTACTTTTCAATTGTATTTTACGTTGATTTTGTCAGTGGATGTTGCCAGTTAACTTGTCCAGCCACATTaacaatatacacatataaaagtGTTCAATGAAAATCTAATTTTCATctcaaagtaaaaagtaaagtgTAGAATaatgaacatg

Function

symbol description
cbx8b Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Orthologous to human CBX8 (chromobox 8).
cbx8 Enables methylated histone binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in chromatin and nucleoplasm. Part of PRC1 complex. Biomarker of esophagus squamous cell carcinoma and glioblastoma.

NR:

description
PREDICTED: chromobox protein homolog 8

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11455 CBX8, PC3; chromobox protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242031.1 True 1664 mRNA 0.44 5 10022614 10024882

Neighbor

gene id symbol gene type direction distance location
LOC122347046 cbx4,LOC107710010,LOC107669529,LOC107553295 coding upstream 4522 10013889 ~ 10018092 (+)
card14 card14,LOC107710011,LOC107669523,LOC107553296 coding upstream 49092 9960368 ~ 9973522 (+)
ccdc40 ccdc40,LOC107710029,LOC107669524 coding upstream 64004 9949851 ~ 9958610 (+)
ppp1r27b ppp1r27,LOC107710012,LOC107591937,LOC107553297 coding upstream 79390 9940906 ~ 9943224 (+)
p4hb p4hb,LOC107553316,LOC107591928,LOC107701207 coding upstream 81871 9930770 ~ 9940743 (+)
rab11fip4b rab11fip4,LOC107710022,LOC107553307 coding downstream 32016 10056898 ~ 10073528 (+)
suz12b suz12,LOC107710018,LOC107553303,LOC107669539,LOC107591916 coding downstream 82298 10107180 ~ 10116281 (+)
LOC122346392 NA coding downstream 101894 10126776 ~ 10130543 (+)
rhot1b rhot1b,LOC107669542,LOC107710015,LOC107553301,LOC105892309,LOC103373013 coding downstream 105764 10130646 ~ 10141607 (+)
mchr1a mchr1a,LOC107704000,LOC107728182,LOC107733891,LOC107561025,LOC107659856 coding downstream 402709 10427591 ~ 10430538 (+)
G43943 NA non-coding upstream 196245 9488057 ~ 9826369 (+)
G43963 NA non-coding upstream 231277 9790155 ~ 9791337 (+)
G43940 nptx1,LOC107750979,LOC107701212 non-coding upstream 240573 9775637 ~ 9782041 (+)
G43936 NA non-coding upstream 294704 9384610 ~ 9727910 (+)
G43947 NA non-coding upstream 399884 9622164 ~ 9622730 (+)
G43982 LOC107553309,LOC107669536,LOC107710025 non-coding downstream 23177 10048059 ~ 10054261 (+)
G44089 NA non-coding downstream 54120 10079002 ~ 10079437 (+)
LOC122346827 NA non-coding downstream 72048 10096930 ~ 10101815 (+)
G44120 NA non-coding downstream 145210 10170092 ~ 10175131 (+)
G44129 NA non-coding downstream 179750 10204632 ~ 10210377 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other upstream 74685 9944518 ~ 9947929 (+)
pecam1b NA other upstream 96357 9916050 ~ 9926257 (+)
G43962 rptor,LOC107728013,LOC107700860,LOC107553319 other upstream 211039 9786840 ~ 9811575 (+)
LOC122346821 endov other upstream 591959 9362142 ~ 9430655 (+)
G43889 NA other upstream 760752 9260633 ~ 9261862 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other downstream 91735 10116617 ~ 10123525 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other downstream 845496 10870378 ~ 10882899 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other downstream 858078 10882960 ~ 10892460 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other downstream 1390391 11415273 ~ 11420330 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other downstream 1977265 12002147 ~ 12010539 (+)

Expression


Co-expression Network