rgs5a (rgs5a,LOC107684230,LOC107732440,LOC107564083,LOC107685321,LOC108441543)


Basic Information

Item Value
gene id rgs5a
gene name rgs5a,LOC107684230,LOC107732440,LOC107564083,LOC107685321,LOC108441543
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16788677 ~ 16796152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242107.1
ATAATAGAGGGAAGCAGGACGACAGCttctaaaagagagagagcagacagcAACTCATGGTGGTGGACTAACTGTGCAAACCTAAAGTGAACAGCTCAGAAAATGTGTAAGGGATTAGCTGCCCTGCCCCAGACATGTCTGGAAAGGGCTAAGGAGATCAAGACTAAATTGGGAACTCTGCTTCAGAAGCCAGAGAATTCCATCGACCTTATTATCCCCTACCAAGAAAAGCCTGAGAAGAAACCAGAGAAGCTTCAGAAACCAACACCTGAAGAAGCAGCCCAATGGCGCGAGTCCCTCGATAAGGTCCTTTCCAACAGCTATGGCCTGGCCACCTTCAAGAGTTTCCTCAGATCTGAGTTCAGCGAGGAGAATATTGAATTCTGGGAGGCTTGTGAGGACTTCAAGAAGACCAAGTCCCCCCTGAAAATGGCCGTCAAAGCTAAGAAGATTTATGAGGACTTCATTCAGACCGGTGGGCCCAAAGAGGTGAACATCGACCACTGCACCAAAGATGTGACTCTGAGGAACCTGGTGGATCTTTCTCCCTCCACCTTCGAGCTGGCTCAGAGCCGGATCTACACCCTGATGGAGAAAGACTCCTTCGGTCGGTTCCTGCGGTCTGAGCAGTACCAGGAACTCCTAAAGTAAACCGACTCGTCCGGCTGCAGGGAGACTCATTACTTtagtcaaaaaaatattttactcaaaGCCTCTACTATAGTATATACACTTTTTGACACATTTCTAAATCTCATTAAACGATACCAAAGTTGGTGAAAGTGGAAAACATCAAGCATGGATGCAGAGTCTCCCTGCAGCTGCTGAACTGGCCCACTGCTAACAAGAACGTCTTAACATAAATTGTTAAAACTAATGTGATTcttgcccagtgctctgaatgtcaaagtcaAGAACTTCAATAAAAGAAGCTGATTAGGGTTTAAGACACAGTATTGCTCCTCATAATAGTGTGATTTGTCATtagcaaacatttaatttgtacaaatgcaAAATGCCAAGGATTTGAAGCGCCTCCTAAAATCTTGTATATACGTCCTATTAATCCGGATCACACCATTTTCTGACCCCTGTAGACTAAATAAAGACTAAAACTGACCCCCACTTGTAATTTATGGCTTTTCGGATAAGTGCAGAAGCGGTTCATGTACTTTTGTTGAGGACGTTCTGACCCGAGTATCTAAGCAGCATGTTCATCAAGGGAATGGGAACGGGAGAGTGTGGGCTTTTTCTTGGAAATGTCTGTGTTAACATTAAAATGCCCAAATGGTAAACCAATAGAAATCATGGGGAAGAACCCACTTAGTATTGAAAGCTTCACTATAAGtcaaagcttaaaaaaaacgtgTGACATGTTAAGATGCACTCCAGTCTCTGGGAACTTGTTGTTTGGGTTACCACTATTGAAAGTTGCTAAGATGGGAATATCAAGTAGGAGGGAATCTCAATAAAGCACTGggcacattattttttattctaaaggCAATGTTTATTCCCATGACAGAACACATTTAGATTAAGTCATGGAAACCTCAAAACATCAGAGTGTTTTTCCGACTTTCTACAGCAAACATTTATCacaatatcataaatatatatatatacatatacacactgtaAGACCTATAAACTATTATACTCTAAACAATAATGATTGCTGCAAAATGTTATTGAAGTTAACATCTATTATTTGCTCTTAGCATGTGCAGCCAGTCATGAGTTGTAAGTCAGATTATTGCAGATTGAAAGGCATATCAAATACATGTAACCCACAAGTGTGATGTTTAGTgtctttttgcatgtttttattttataagtgtGTTTCACAGACACATATACTCTTGCATGTTTCTTTATTATACTGTGTGTAGCCATGTCACTAAATCTAATAACATTCACTCATAAATGAGCAGTGGTAGGTGCCTCCAGAAGTCCTTACTGATGTTCCAGAAGCAAATTATTAGTTCACTGCGGGACAGGTTTAGATTAATATGGCTATCAGTAACTAGGCATCACCaatgtaaagtaaattaaaGCGTATTGAATGGATTCAACAAGAATTAGTTAcaatttagttacattttaaaaataatcttttaaaattattacattggcttaaaaaaatacagaggtTTTGTCAAAATTGTCAGTAAGGACTGCCAGGGTACCTTGCATATACGAGAAATCTGCATAAAactatatgcatgtatgtttgtAGTTGCTCATATAAAAATCCATTATCACATTAAA

Function

symbol description
rgs5a Is expressed in bulbus arteriosus; cranial blood vessel; eye; and trunk vasculature. Human ortholog(s) of this gene implicated in essential hypertension. Orthologous to human RGS5 (regulator of G protein signaling 5).

NR:

description
PREDICTED: regulator of G-protein signaling 5

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242107.1 True 2271 mRNA 0.39 5 16788677 16796152

Neighbor

gene id symbol gene type direction distance location
nos1apa nos1ap,LOC107711121,LOC107594625 coding downstream 24403 16687378 ~ 16764274 (-)
LOC122346973 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding downstream 105244 16676285 ~ 16683433 (-)
uap1 uap1,LOC107724142,LOC107551035,LOC107692418 coding downstream 128944 16649465 ~ 16659733 (-)
ddr2a ddr2,ddr2a,LOC107724144,LOC107551036,LOC107594601 coding downstream 141062 16618572 ~ 16647615 (-)
hsd17b7 hsd17b7,LOC107551038,LOC107758362,LOC107692446,LOC107724130 coding downstream 171478 16610280 ~ 16617199 (-)
rgs16 rgs16,LOC107684360,LOC107711030,LOC107551031,LOC107732438,LOC107564088,LOC107685341 coding upstream 11459 16807611 ~ 16809797 (-)
brinp3a.1 brinp3a.1,LOC107585174,LOC107711117,LOC107732447,LOC107685317,LOC107564080 coding upstream 102533 16898685 ~ 16926368 (-)
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding upstream 421835 17217987 ~ 17224910 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding upstream 757351 17553503 ~ 17555239 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding upstream 872035 17668187 ~ 17669843 (-)
G45770 NA non-coding downstream 465872 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 517569 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 519285 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 521135 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 670091 15902216 ~ 16118586 (-)
G45897 NA non-coding upstream 391304 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 718486 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1011469 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1026384 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 1244212 18040364 ~ 18044630 (-)
fam183a fam183a,LOC107551015 other downstream 424657 16361167 ~ 16364020 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 728211 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 728910 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 1023570 15756309 ~ 15765107 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 1183207 15603910 ~ 15605470 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 20488 16816640 ~ 16830261 (-)
G45895 NA other upstream 390537 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 439638 17235790 ~ 17246386 (-)
G45910 NA other upstream 511663 17307815 ~ 17308478 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other upstream 586175 17382327 ~ 17414139 (-)

Expression


Co-expression Network