mif4gda (mif4gda,LOC107728181,LOC107561027,LOC107659858)


Basic Information

Item Value
gene id mif4gda
gene name mif4gda,LOC107728181,LOC107561027,LOC107659858
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10408908 ~ 10411264 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242109.1
ATAGAATTCGGAGGCATGTGCAAATGCGCATGCGCGCTGGCCAGTCCCACGCCATCAGGAAACGAATCAACAAGCGCGAGGATTCCCCGTGCATCGTTAAACATGGACTCCGCTTGGACGGATCTAGACGTTGTAACTCAGACTATGTTTGAAAAAGCGATTGACGATCCCAAGTCGGCCGATTTGGAGAAGCTGTCCAACGCGGTTGTAGACCAGTCACTGAAAGACATCTCCTTCTGTAAAGACGCCGGCCGCATGTGTTACGCTGTAGTTCAGgCGGAAGCTCAGAAAGCTGCGTCCAGTGTGTTCAGGAGAAACCTGTTGACTCGACTACAGCAAGAGTTCACTGCCAGAGAGGAGACCCGAAACCGCTCGCTGCAGGAGTGGGTCTGTTTGGTCACGTTTATCTGCAGCGTATTCGATTACATCAAGgtGAACAACGCCCCTCTTGTGGCCCTCGTGGATCCAGTATATGACTGCCTCCATAGGTTGGCTCAGCCAGATGCCTTGACCAACGAGGAGGAAGTGGACTGCCTAGTCGTACAGCTCCATCGCGTTGGTGAGCAGCTCGAGCAAACAAACTCCCAGCGCATGAACCAGCTTTTTTACTCGCTGCGGGACGGTTTTCTCCTTCAGGAAGAGCTCACCTCCATGACGAGGCTCTTGCTCCTGGAGATCTTGGAGTTCAGGGCCAGCGGCTGGACCCTCACCGACACCGCACACAAGTACTACTACAGCGAAGTAGTTAATTGAGGGCCGCTAAGAAGATGTTCCTTGTTAACATTGGGATGTCAACCATTCGGTTTTGGCGGAAGGTCTAAAGAGTGCTTCGCGGGAGAAAGAAGTGGAAACCCTGGAGGACTATGGCAGAGCTCGTGTTCACGCATTTGCATGTGTTGTGTTCAGCGTTTGAGTTTAGCTCAGAACATTCGGTCAGCATCACACATCGGCACAGGATATTGATTTGATGCAATAAGAAAAGTATTCGCTACCAGCTCTAAAACTGAGCCACCAGCAGTATTTCTGAATGGTAGTTGTCTTTTCtggtttttgttattgttagaGGTTTGATACAATGTACACTCTTCATATTTTTACAATCAAAATGGTCTAATTGCACCCTCAGAGGAAGACTGTCTGACCTTTACCTGTGTTGGTAATACAGTAGGATACCTTGTAAACTTTTCCtaattttatattagtttataatGGCCTACATTGTTAAAGTTTCTATATGGGTCACTATGTGTAAAAATTGTTCAGTCATGTTGGCTGCTTGTGAggatattttacaaaatttgaGAGCATTGACATTgtcttgtttatatattatagcgTCTGATATTTTGATTTTCATAAATAGAACTTttgctcttgctctctc

Function

symbol description
mif4gda Predicted to enable translation activator activity. Predicted to be involved in regulation of translational initiation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human MIF4GD (MIF4G domain containing).

NR:

description
PREDICTED: MIF4G domain-containing protein B-like isoform X1

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242109.1 True 1384 mRNA 0.46 7 10408908 10411264

Neighbor

gene id symbol gene type direction distance location
gga3a gga3,LOC107704010,LOC107573533,LOC107733910,LOC107659859 coding downstream 2451 10399345 ~ 10406457 (-)
sumo2a LOC107573531,LOC107733894,LOC107704011,LOC106574529 coding downstream 10277 10395173 ~ 10398631 (-)
jpt1a LOC107728178,LOC107659861,LOC107733897,LOC107561029,LOC107573532 coding downstream 14692 10390047 ~ 10394216 (-)
zgc:174863 NA coding downstream 24825 10377331 ~ 10384083 (-)
sept9b sept9b,LOC107754867,LOC107566422,LOC107561033,LOC107718712,LOC107674495 coding downstream 73867 10296004 ~ 10335041 (-)
grb2a grb2a,grb2,LOC107733915,LOC107728184,LOC107704009,LOC105012273,LOC107659857,LOC108441871 coding upstream 437 10411701 ~ 10427410 (-)
cfap52 cfap52,LOC107757424,LOC107659863,LOC107703996 coding upstream 98658 10509922 ~ 10516964 (-)
LOC122346769 LOC107733892,LOC107555367,LOC107703995 coding upstream 105854 10517118 ~ 10522696 (-)
LOC122346899 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 coding upstream 306617 10717881 ~ 10729269 (-)
sec16b sec16b coding upstream 519306 10930570 ~ 10943617 (-)
G44213 NA non-coding downstream 20466 10388044 ~ 10388442 (-)
G44210 NA non-coding downstream 32330 10376140 ~ 10376578 (-)
G44209 NA non-coding downstream 35340 10373170 ~ 10373568 (-)
G44208 NA non-coding downstream 36056 10372640 ~ 10372852 (-)
G44168 NA non-coding downstream 166399 10242210 ~ 10242509 (-)
G44338 NA non-coding upstream 170145 10581409 ~ 10582029 (-)
G44339 NA non-coding upstream 170769 10582033 ~ 10582284 (-)
G44341 NA non-coding upstream 234869 10646133 ~ 10653370 (-)
G44350 NA non-coding upstream 275796 10687060 ~ 10895352 (-)
G44353 LOC107569358,LOC107704001,LOC107555380,LOC107733907,LOC107757425,LOC107660462,LOC105019150,LOC108438877 non-coding upstream 283338 10694602 ~ 10904297 (-)
LOC122347367 NA other downstream 50058 10355877 ~ 10358850 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other downstream 165483 10204617 ~ 10243425 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other downstream 263740 10138905 ~ 10145168 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 381228 10025453 ~ 10027680 (-)
anapc11 anapc11,LOC107553313 other downstream 459920 9945667 ~ 9948988 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other upstream 22940 10434204 ~ 10509003 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 167725 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other upstream 298781 10710045 ~ 10716741 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other upstream 537428 10948692 ~ 10985132 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other upstream 643771 11055035 ~ 11069466 (-)

Expression


Co-expression Network