efcab7 (efcab7,LOC107704512,LOC107731637,LOC107739082,LOC107692381,LOC107591198)


Basic Information

Item Value
gene id efcab7
gene name efcab7,LOC107704512,LOC107731637,LOC107739082,LOC107692381,LOC107591198
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14770982 ~ 14780729 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242114.1
TTTGTTTACACACAGAAGCCATGGCAATCAGACTCGATGGAGAGCGACACTACCAACCATAAAATAGCCCACGGACTCGCCTCTCTAGCTCTCTGCTCTTGATATTTGCTCTTGATAAACATGCTTTGATATTTCGCTTGCATATTTCATGTCTTTTCATAATGCAGCGCTCAGAGGAAGAGAGGTTTTACGTGAAGTGCAGGGCTGCTTATCTGTCTGTGTTCAGATCCAGCTTGGTTAATATGACTTCAAAAGATCAGCTGTGCACCGTACTTCAGCAATCGGGAACAAATCCATCACAGAAAGCTTTAGACAAATATTGGCCCCCAGGAACCAAGAAGTTGAATTTTGATGACTTTTGTGAAATACTTAAGAAGGAAAAGCCAGCAGAACCAGACCAGCTTATGAGAATTTTCAAGAAATTTGATGTAAATTGTGATGGATATATCTCACACGAAGAGCTCAGCAGAATCCTTACTTCATCAGGTGAAAAAATGTCACCTAAGGAAGTGGATGAAATCTTTTCCTTAGCGGATGTCAACAAAGATGGGAAATTAGACTATGCAGAGTTCTGCAGGCTTCTTGAGTCTACAGCAGAGAAGTGTCAGACCGCAGCACTGAAGAAGCTTGAGGCCGATGCCAAACTGAAGAGGCAGAACTTTGGCAACCAGTTGGACAACTCTCCACAGAGCTCAGAGTCCCAACCTGAGCTTCCAGCTTCAGAGACACAGCCCAGAACAGAGCTAGAAACCACACAGAGGAAAGATAGTCGCTCATCATCCAGACCATCCTCGGCTCGTAGTCGTCGGTCATCTTTATCCACAGTCATCACCATGGGCGCTTGCAGCACTAAGAGTAGCAGGCTGGTGGAGCCCACATCTCTACAGGAGTGGCATCGGACTCTCATGAGAGGTTGTTTTTATCTGGAAGAAGATGGAACGATTGTTTCTCTTCAGTATCGCCTGGTTATACCGGAGACTACCAGCGTGTGTCTGGCCATACGACCCCTCAACCTTAGCCCTGAGAAGCCTTCGCCGTGGATGTGTGTGGACACAGCTGTCTATGTGGTGACGGGGAATGAGACCAAAGAAGATTCAAATTTGGTTTGCTTCACTGATTTAAGGGATAAGGAGAGATTTCTGTGGAGAGGAGAGCTCAGTGCCGGCTCATATCTGCTCTTGCCCTTCACCACTGGCTGCAGACtgatgaagaggatgaggaagacTTCCACTAAAGCTGCTCAGCTAGTCAACCGCACCCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGCATTGTCTGACATCTTTGAAGTGATTGATTTGGACGGCAGCGGTCTGCTGAGTCTAGAGGAGTACAACTTCTTTGAACAGAGAACCAGTGGAGAGAAATGCGATGAGGACTCCTGGGCCATCTGCAAAGAGAACTTcgaaacaaagaaaaatgagTTAACCAGACAAGGTTTCCTGGAGCTCAACCTGATGGAAGCAAATGATCGTGAGGGAGATCCCAGGGATTTGTGGCTCACCCTGGAAGCCATGGGATACAACCACAGTTTGGAGATGGTGGAGGCCTGTCCGTTTGTCATTGAAGTCTACTGTGAAGATGTCGAGGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGATCAAGATGTTGAATTCAGCTGTACAGAGGTCCATCACGTCAAAAGCAGAAGCCAGATCTCTTAAAGGTCATGAGAATGTCTTGATTTATACATACAAAGGAGAAAGCAGGATTTCATCAGTCATTGCCAATAAGTCCAATCAGAAGGTGACGGTGCACATCAACAGTGAACAAAGCAAGAACTGTGTGAGCAGCAGGGGCATGAGTGTGTTTGCTGTGGAGGTTCCAGCGAGGACTAAGATGGTATGTCAGCACGTCATGGCTTTAAATGATCAACAGGAGTGGACTTACAACTGTGTTGAGACCATCATACCAAGTTTGTAATTGCCTCCGTAACAGAAGGAACTTATTATAAGACAACAAATAATGTAGctcttgtaaaataaatatgttttgtttagctACAATGACCATTGTAAAGATGTTTTATAAAAGCTTTCAAAAGGtatcatgtttgttttgctgtttctgTAAGCATTATTGTATGTTATTAGTTACATGcatgatattgatgttttttttaaataaagcaattgttttcatt

Function

symbol description
efcab7 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23852 EFCAB7; EF-hand calcium-binding domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242114.1 True 2196 mRNA 0.44 13 14770982 14780729

Neighbor

gene id symbol gene type direction distance location
pgm1 pgm1,LOC107731639,LOC107704513,LOC107591179,LOC107739071,LOC107692428 coding downstream 1085 14762711 ~ 14769897 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177,LOC107739155 coding downstream 13030 14657884 ~ 14757952 (-)
cachd1 cachd1,LOC107556548,LOC107692379,LOC107739146 coding downstream 127994 14587270 ~ 14642988 (-)
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding downstream 187981 14523682 ~ 14583001 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding downstream 278516 14485606 ~ 14492466 (-)
alg6 alg6,LOC107704515,LOC107692382,LOC107591199 coding upstream 8947 14789676 ~ 14801854 (-)
foxd3 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 coding upstream 24575 14805304 ~ 14812624 (-)
atg4c atg4c,LOC107704517,LOC107731653,LOC107556554,LOC107591181,LOC107692386 coding upstream 126638 14907367 ~ 14914995 (-)
angptl3 angptl3,LOC107704519,LOC107731634,LOC107556555,LOC107717137,LOC107692388,LOC107591184 coding upstream 143410 14924139 ~ 14929125 (-)
usp1 usp1,LOC107591200,LOC107731620 coding upstream 176300 14957029 ~ 14962572 (-)
LOC122346442 NA non-coding downstream 114951 14651716 ~ 14656031 (-)
G45277 NA non-coding downstream 276960 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 491953 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 554706 14214638 ~ 14216276 (-)
G45270 LOC107692440 non-coding downstream 557996 14211366 ~ 14212986 (-)
G45355 NA non-coding upstream 124773 14905502 ~ 14905708 (-)
G45532 NA non-coding upstream 321961 15102690 ~ 15154616 (-)
G45543 NA non-coding upstream 404423 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 452538 15233267 ~ 15745536 (-)
G45560 NA non-coding upstream 538656 15319385 ~ 15320034 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 577816 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 985079 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1089688 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1873264 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3701516 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 546854 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 708389 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 754657 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 823181 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 975580 15756309 ~ 15765107 (-)

Expression


Co-expression Network