pgm1 (pgm1,LOC107731639,LOC107704513,LOC107591179,LOC107739071,LOC107692428)


Basic Information

Item Value
gene id pgm1
gene name pgm1,LOC107731639,LOC107704513,LOC107591179,LOC107739071,LOC107692428
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14762711 ~ 14769897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242115.1
TACGTGGTGAACGCACATCCCGCTGGGCACCCGGATAGTGACAGGCGCTGACCGCTGCTGCAACATGGTGAAAATTACAGCTATTAAGACGAAACCGTACACCGACCAAAAACCCGGAACCAGCGGTTTGAGAAAGAGGGTGACTGTATTCCAGCAGAACCAGCATTATGCGGAGAATTTCATCCAGAGTATCATTTCCACCATTGACCCTGCTCAGAGGCAGGAGAGCACCCTGGTAGTGGGAGGAGATGGACGCTTCTTCATGAAAGACGCTATTCAGCTGATCATCCAGATTTCTGCAGCTAATGGGATTGGCGGTCTGGTCATTGGTCAGAATGGGATTATGTCAACACCTGCTGTTTCCTGTGTGATCCGAAAAATCAAAGCCGTCGGGGGGATCATCCTGACAGCCAGTCACAACCCTGGCGGCCCCAATGGAGACTTTGGCATCAAGTTCAACATATCTAGTGGAGGTCCTGCACCAGAAGGCATCACAGACAAAATCTTTCAGATCAGCAAGAGCCTCCAGGAATATCACATCTGCCCTGAGCTCAAGGTGGACCTCTCAACCATTGGGAAGCAGACCTTTGAGGTTGACACGTTCAAGCCCTTTACTGTTGAAATTGTGGACTCGGTGGAATCCTATGCAGAGATGCTGAGAGATATCTTTGATTTTGCTGCTCTGAAAGAATTGCTCTCAGGACCTAATCATATCAATGTACGGCTCGATGCAATGCATGGAGTTGTGGGTCCCTATGTGAAGAAGATTGTGTGTGAAGAGCTTGGCTCGCCTGCTAACTCTGCTGTTAACTGTGTCCCCTCTGAGGACTTTGGAGGACACCATCCCGACCCTAACTTAACGTATGCTGCTGATCTGGTCAACACTATGAAGGGAGGTGAATATGACTTCGGAGCAGCTTTTGATGGTGATGGCGATCGTAACATGGTTTTGGGTAAACATGGATTCTTTGTAAACCCCTCCGACTCTGTGGCAGTCATCGGTGCCAACATTACATCCATCCCTTATTTCCAGAAGACTGGTGTAAAGGGTCTGGCTCGCAGTATGCCCACCAGCGGGGCTTTGGACAATGTAGCCAAAGCTTTAAAGATGCCGCTTTATGAGACTCCCACAGGCTGGAAATTCTTTGGAAACTTGATGGATGCTGGCAAGTTATCCCTCTGTGGTGAAGAAAGCTTTGGTACTGGTTCTGATCACATCCGGGAGAAGGATGGTCTGTGGGCAGTTCTCGCGTGGCTGTCGATCCTGGCCACTCGCAAACAGAGCGTAGAGGATATCATGAAGGACCACTGGCAGAAGTTTGGAAGGAACTTCTTCACAAGGTACGACTATGAAGAGGTGGACTCGGACGCTGCGAATAAGATGATTGATCACTTACAGACCACTATGTCTGATAAAGCCTTTGTAGGGCAGACGTTCTCCTCGGGGGATAAAACATATCAAGTGGAGAAAGCTGATAACTTTGAATACACAGACCCTGTCGATGGCAGTGTTTCTAAAGGACAGGGTTTGAGGATCATCTTCTCTGATGGCTCACGTATCATCTTCCGTCTCAGCGGGACAGGCAGTGCCGGGGCAACCATCAGACTTTACATTGACAGCTATGAAAAAGACCCTCAGAAAATTTATCAGGACCCACAGGTCATGCTGGCTCCTCTGGTGGACATTGCCTTGAGGATCTCTCAGCTTCAGGAAAAGACGGGCCGCGCCGCTCCAACTGTGATCACATAATTACTCTAGAGCCCATATTCACCTGATCCAGCCCAGACTAGCCCTCACTGGCAATGCCTTACTTTATCATTATTGTCATCGTATTGTTTGATACCCCAGTCATTATGTGTTCAATGTGTCTTCAAGAAGGTGTCACATTTCCAGTGTTCCACATGCACAATCAAAGATGTATATCCATtataaatagagagagagagagtataaaataaagtagagtaaaaaaaaaatgttcaagtCGTGCTTCTTTTCATGCGCTTTGGTTTGTCATTGGGTCTAAAGCGCTTAACTTTTATGTCTGCTAGATCTATCATATATGGAATCTAAAAATGACAgctatgttttattcatatgcGCAGTTTGTCTTTCATTTGAGGCTGAAAGTAGTAACTATTACGCCGCAGTGTGTTATTAGTGGATAAAGAATCCTAAATGCAGGAAACCTGCATTAAATATATCCTGCTTTTAAATTAACACCACAAATAGCATGCGTGTCTTTCAATGGGAGTTGACACTTAAAAAAggtcacacaaaaaaattacacagaTTGCACAGATTGGATTTTCATAAAACTTTGCATACGTTATAAGACTTTATGTCAGAGTTTGTTTACAATGGTCTACCAAACACAATATATGtcacaaatatgtaaattaaaatctgctgcttctttttttttaattaaggggtagttcaccaaaaaagtaaaaattttgtCATGTACTCACCCCAAGTTCTTCTGTTTGAGTGTCTTTATTTTGtaagaagatttttttaaagattgatTTTAATCATACAGTTGTCGGCAGCCATTAACTTCCACAGTATGGGAAAAATGTTCTGGAAGTCATTGGCTAACGTCTGGTTTGGTTATTAACATTCTTCAAAGTGTCTTTCATTgtgattaaatgtgattatgAATAATTTGCAGGAAACGTTATGATAAAACGAATAAGACT

Function

symbol description
pgm1 Predicted to enable phosphoglucomutase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be active in cytosol. Is expressed in central nervous system; digestive system; myotome; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1).

NR:

description
phosphoglucomutase-1

GO:

id name namespace
GO:0019388 galactose catabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005992 trehalose biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0004614 phosphoglucomutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242115.1 True 2706 mRNA 0.44 11 14762711 14769897

Neighbor

gene id symbol gene type direction distance location
ror1 ror1,LOC107731648,LOC107556549,LOC107591177,LOC107739155 coding downstream 4759 14657884 ~ 14757952 (-)
cachd1 cachd1,LOC107556548,LOC107692379,LOC107739146 coding downstream 119723 14587270 ~ 14642988 (-)
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding downstream 179710 14523682 ~ 14583001 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding downstream 270245 14485606 ~ 14492466 (-)
dnajc6 dnajc6,LOC107659052,LOC107692374,LOC107591170,LOC107590617 coding downstream 277231 14458989 ~ 14485480 (-)
efcab7 efcab7,LOC107704512,LOC107731637,LOC107739082,LOC107692381,LOC107591198 coding upstream 1085 14770982 ~ 14780729 (-)
alg6 alg6,LOC107704515,LOC107692382,LOC107591199 coding upstream 19779 14789676 ~ 14801854 (-)
foxd3 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 coding upstream 35407 14805304 ~ 14812624 (-)
atg4c atg4c,LOC107704517,LOC107731653,LOC107556554,LOC107591181,LOC107692386 coding upstream 137470 14907367 ~ 14914995 (-)
angptl3 angptl3,LOC107704519,LOC107731634,LOC107556555,LOC107717137,LOC107692388,LOC107591184 coding upstream 154242 14924139 ~ 14929125 (-)
LOC122346442 NA non-coding downstream 106680 14651716 ~ 14656031 (-)
G45277 NA non-coding downstream 268689 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 483682 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 546435 14214638 ~ 14216276 (-)
G45270 LOC107692440 non-coding downstream 549725 14211366 ~ 14212986 (-)
G45355 NA non-coding upstream 135605 14905502 ~ 14905708 (-)
G45532 NA non-coding upstream 332793 15102690 ~ 15154616 (-)
G45543 NA non-coding upstream 415255 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 463370 15233267 ~ 15745536 (-)
G45560 NA non-coding upstream 549488 15319385 ~ 15320034 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 569545 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 976808 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1081417 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1864993 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3693245 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 557686 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 719221 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 765489 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 834013 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 986412 15756309 ~ 15765107 (-)

Expression


Co-expression Network