LOC122347094 (tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075)


Basic Information

Item Value
gene id LOC122347094
gene name tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7661464 ~ 7695119 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242121.1
CAGCATCCACTGAGCAAGGTAACGTGTGTGCAAGCAAGAGCAGGGTAATTCTTGCTACCTGCTCTGCAGCTAAAGGGATCTGTCCTCCTGTCATCTGTCTGCTATTGGATTTACCTGGAGAACAAGCACAGGATAGAAAGGGTGATTTTAAGGAAGCAAAAGAGTGACAGAAGGAGGCAACCATGGCCCGGCTGAACTGGTGTCTGGCAGCAGTGATTAGCTGGGGGAAGTTCCTCTTCTCTTGTTTCTTTCCGTTGAGAGCAGCTAGGAGAGATAAGCCAGAAGATTTTGAAGCCGTTCATTCCCACACCTTCAAGGCTAAGACCTTTAAAAAGGCCAAGAGTTGTGCAGTATGCAAGCAGGCTTTGACGAAGGAAGGCCTGGTCTGCAAAGAGTGCAAGTTGTCCTGCCATAAGAAATGTGAGGTAAAGGTAGCCACAGCCTGTGAATCTACAGCTACTACAACGACGACAACTACTGCAACTAACTACAATCAGGGATCCACAAAGTCTCCCAATATAGACTCCAAACGAAGGCCATCCAGGACCCTAAGTTTGATGCAAAAAATGGAGGAAAATAATGAAGTGGACCTGGTCTACATCACAGAGCGCATCATTGCTCTGTCCTTCCCTGATGGAACAGAGGAGAGTAAATACAGTGTGCACCTGAGGGAAGTGACCAGCATGCTCCGTTCTAAACACCAGCAGCATTATCTACTGCTTAATCTTAGTGAACGGAGACATGACATCACCAAGCAGAACCCAAGGGTGCTGGATTTTGGTTGGCCCGATCATCATGCTCCTGCTCTAGACAAAATTTGCAGTATCTGTAAAGCCATGGACACCTGGCTTAATGCAGACCCTCACAATGTGGTGGTACTGCACAACAAGGTAATCATATCTGGCCTTGGGCACCCAATCTCCACCTCCTTCGCCTTGCATGACTGACCAGACTGACATGAtgtcact
>XM_043242122.1
CAGCATCCACTGAGCAAGGTAACGTGTGTGCAAGCAAGAGCAGGGTAATTCTTGCTACCTGCTCTGCAGCTAAAGGGATCTGTCCTCCTGTCATCTGTCTGCTATTGGATTTACCTGGAGAACAAGCACAGGATAGAAAGGGTGATTTTAAGGAAGCAAAAGAGTGACAGAAGGAGGCAACCATGGCCCGGCTGAACTGGTGTCTGGCAGCAGTGATTAGCTGGGGGAAGTTCCTCTTCTCTTGTTTCTTTCCGTTGAGAGCAGCTAGGAGAGATAAGCCAGAAGATTTTGAAGCCGTTCATTCCCACACCTTCAAGGCTAAGACCTTTAAAAAGGCCAAGAGTTGTGCAGTATGCAAGCAGGCTTTGACGAAGGAAGGCCTGGTCTGCAAAGAGTGCAAGTTGTCCTGCCATAAGAAATGTGAGGTAGCCACAGCCTGTGAATCTACAGCTACTACAACGACGACAACTACTGCAACTAACTACAATCAGGGATCCACAAAGTCTCCCAATATAGACTCCAAACGAAGGCCATCCAGGACCCTAAGTTTGATGCAAAAAATGGAGGAAAATAATGAAGTGGACCTGGTCTACATCACAGAGCGCATCATTGCTCTGTCCTTCCCTGATGGAACAGAGGAGAGTAAATACAGTGTGCACCTGAGGGAAGTGACCAGCATGCTCCGTTCTAAACACCAGCAGCATTATCTACTGCTTAATCTTAGTGAACGGAGACATGACATCACCAAGCAGAACCCAAGGGTGCTGGATTTTGGTTGGCCCGATCATCATGCTCCTGCTCTAGACAAAATTTGCAGTATCTGTAAAGCCATGGACACCTGGCTTAATGCAGACCCTCACAATGTGGTGGTACTGCACAACAAGGTAATCATATCTGGCCTTGGGCACCCAATCTCCACCTCCTTCGCCTTGCATGACTGACCAGACTGACATGAtgtcactgtaaaaaaactaaatcagttGCTACCttaaaatttaat
>XM_043242123.1
GTTGAGAGCAGCTAGGAGAGATAAGCCAGAAGATTTTGAAGCCGTTCATTCCCACACCTTCAAGGCTAAGACCTTTAAAAAGGCCAAGAGTTGTGCAGTATGCAAGCAGGCTTTGACGAAGGAAGGCCTGGTCTGCAAAGATCACATGATTCTTAAAGTCCCTCCATGAGTTTGTGAATGGTGAAGCCTGGGCCTTCATGCTGGAACCACTCAAGAGTTGTTACAAGCCATGTTTTTAAGACTGCCAATGACTTCAGTATCAGGGGCAGGCTTCATTCTCTTTCAGGATCAACTGAGTGCAAGTTGTCCTGCCATAAGAAATGTGAGGTAAAGGTAGCCACAGCCTGTGAATCTACAGCTACTACAACGACGACAACTACTGCAACTAACTACAATCAGGGATCCACAAAGTCTCCCAATATAGACTCCAAACGAAGGCCATCCAGGACCCTAAGTTTGATGCAAAAAATGGAGGAAAATAATGAAGTGGACCTGGTCTACATCACAGAGCGCATCATTGCTCTGTCCTTCCCTGATGGAACAGAGGAGAGTAAATACAGTGTGCACCTGAGGGAAGTGACCAGCATGCTCCGTTCTAAACACCAGCAGCATTATCTACTGCTTAATCTTAGTGAACGGAGACATGACATCACCAAGCAGAACCCAAGGGTGCTGGATTTTGGTTGGCCCGATCATCATGCTCCTGCTCTAGACAAAATTTGCAGTATCTGTAAAGCCATGGACACCTGGCTTAATGCAGACCCTCACAATGTGGTGGTACTGCACAACAAGGTAATCATATCTGGCCTTGGGCACCCAATCTCCACCTCCTTCGCCTTGCATGACTGACCAGACTGACATGAtgtcactgtaaaaaaactaaatcagttGCTACCttaaaatttaatcaaattggCATTTcaatttag

Function

symbol description
tns1a Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cell junction. Orthologous to human TNS1 (tensin 1).

NR:

description
PREDICTED: tensin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242121.1 False 968 mRNA 0.48 8 7661523 7695119
XM_043242122.1 True 1000 mRNA 0.47 8 7661485 7695119
XM_043242123.1 False 929 mRNA 0.45 9 7661464 7694866

Neighbor

gene id symbol gene type direction distance location
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding downstream 2264 7608473 ~ 7659200 (-)
LOC122346455 tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294 coding downstream 273165 7385719 ~ 7388299 (-)
col18a1b LOC107709584,LOC107586328,LOC107688819 coding downstream 278659 7356348 ~ 7382805 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding downstream 323576 7333023 ~ 7337888 (-)
psmb3 psmb3,LOC107688824,LOC102792592 coding downstream 388987 7269271 ~ 7272477 (-)
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding upstream 30284 7725403 ~ 7732324 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding upstream 270629 7965748 ~ 7980089 (-)
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding upstream 318006 8013125 ~ 8015759 (-)
cacng1a cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457 coding upstream 487896 8183015 ~ 8188384 (-)
cacng4a LOC107688901,LOC107586376,LOC107716888 coding upstream 503992 8199111 ~ 8202841 (-)
G43478 NA non-coding downstream 163029 7461191 ~ 7498435 (-)
G43472 NA non-coding downstream 231018 7429778 ~ 7430446 (-)
G43251 NA non-coding downstream 838443 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 1178071 5995956 ~ 6483393 (-)
G43516 NA non-coding upstream 103005 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 161346 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 354278 8049397 ~ 8050678 (-)
G43660 NA non-coding upstream 487560 8182679 ~ 8182882 (-)
G43691 NA non-coding upstream 598935 8294054 ~ 8294286 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 75097 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 331899 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 346690 7274840 ~ 7314774 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other downstream 416285 7108162 ~ 7245179 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 634037 7001115 ~ 7027427 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 41971 7737090 ~ 7770451 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other upstream 351983 8047102 ~ 8048008 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 1013587 8708706 ~ 8713858 (-)
G43890 NA other upstream 1565497 9260616 ~ 9261245 (-)
G43896 NA other upstream 1570883 9266002 ~ 9267324 (-)

Expression


Co-expression Network