tprg1 (tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662)


Basic Information

Item Value
gene id tprg1
gene name tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13314057 ~ 13333574 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242168.1
CTCTAGCGAGGGAGTTGCTGCTGCTGCCTCACGGAGGTTTCGTTTTCTCTTCAACGCCCATCACGGAATATCACGGAAGTAGGAAATAGGTCCTGACGCGGACGCAAAGCGTAGTTAAAACACAGAACGTTGATTTAATTCTTGCAACCAGCGGTCGCCATGTCGGAGAAAGATGAGGAGACGTTCAAGTCTGTGGACTTGGAGCAGCAAACCGAAAAGTCTCCGGAACCAGACATCAAGCCTCAAGAATCTcaaagtgaaacaaaaacagataaacCCAGCACTCCTTCTACAGAAGCCAAGGCAGAAAGCACCCCCCCTGCAAAAACGTCAGCCGCCAAAGCTAAATGGGCAGCATCTGCGGAACAGTTTAAACTGAAGAGATTTTTTGTCCTCAGGccTGGAACACTGGACCACGGCATTGAGGATATTAAAACTCTGGTGAATCCTACAGAAGATGGTGCTGTCCAAAGTGTCTGGCTCATGGCTgaggttgaTCATTGGAACAACGAGAAAGAGCGCTTGGTGCTCATCACGGAGAACACCCTCCTCATCTTCAAATATGACTTTGTCATGCTAAACTGTGAGCAGATTCAAAAGATTCCACTCAACTATATCGACCGCATCTGCAGTGGTACCTTCTGCTTTCCACCACGTTCCCTCCTGACGAGAGAAGGTGAGGGTGTGCGGGTGTTTTGGGACAAACTCAGAGAACCGTCTTTCTCTTCCCGTTGGAATCCTTTTTCTGTTGACTATCCTTTCAGCACATTCACCTATCACCCTGTCAAGAGTGCCAATGAGCAGCTGGGCCGTCTGTGTGATATTCAAAACTTCAGAGAGCAGCTGACTTTGGCAGCACAGAAAGCCCACAGCAAGAATCCTATACCTGGGAAAGCCAACGGGGTTCTTGTGCTGAATCAACCCATCCTAATTGAAGCCTACGTGGGTCTGATGTCTGTTATAGGCAACCAAAACAAGCTGGGCTATTGCTTAGCAAGAGGCAATATTGGTTTCTGAGGGCACTTTGAATCCTTCCGATAATGGTTTACACTAAGAAATTCTCTTATACAAGCCGAGCATGTGTAATTTATACTTAAGATAATGAAGGATTTTTTTGAACCAAGATGAATGTATGatttatattcttaaaatacattCCATTTCCATCAAACCTTCATCTACTTATATTGCCCCAAGAACCTTAACAAAGTCTATCTGTCATTTCCTTTGGGTTGTGTCATAACATACAAAGCATGATGTTCCTCCTCCTACGACTTCCTGTGTAGaaatatttggttttttttggtttttctgttttagttatttCTCTGCAGTAACTTGATTCTTCACAATGTGCCTTTCCTTTCTGTATTTATGCTGATATTCTACCTCGTCACAAGGCTTTTTACAAGGCAATTGATGCATGAAGGTACACAAGTCATTTGTTTGATGGTATAGGGTTTATTATTACAGTAGAACAGAGTGCTGGATTTTCCCTTTTCTTGTAATTACTAGATTCACTCGGTTGTCTTGATTTGTTTCTACAGTAGAATGTCAAACACATTGtaaagtcttttttaaaaataaacggTAATACAGAAACGTAACGCATGTGCtgaatacagtaatacagtaacTACAATTAGGAGTAATAAAAAAACGGTGCTTTATTTA

Function

symbol description
tprg1 Predicted to be active in cytoplasm. Orthologous to human TPRG1 (tumor protein p63 regulated 1).

NR:

description
tumor protein p63-regulated gene 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242168.1 True 1674 mRNA 0.42 6 13314057 13333574

Neighbor

gene id symbol gene type direction distance location
LOC122346939 lpp,LOC107684332,LOC107590653,LOC107717931,LOC107696776,LOC107752632,LOC107552245,LOC108427685 coding upstream 34877 13119195 ~ 13279180 (+)
inpp5d LOC107694111,LOC107590654,LOC107717933,LOC107696774,LOC107552268,LOC107752650 coding upstream 234011 13065838 ~ 13080046 (+)
gpr17 gpr17,LOC107752663,LOC107717943,LOC107694121,LOC107590682,LOC107552259,LOC107696754 coding upstream 249628 13058859 ~ 13064429 (+)
LOC122346752 LOC107590657,LOC107694127,LOC107717944,LOC107696773,LOC107752637,LOC107552269 coding upstream 255936 13039523 ~ 13058121 (+)
sap130a sap130a,LOC107696772,LOC107590658,LOC107717942,LOC107552246 coding upstream 275777 13024547 ~ 13038280 (+)
tp63 tp63,LOC107574491,LOC107590651,LOC107659018,LOC107752631,LOC107696778 coding downstream 16947 13350521 ~ 13390651 (+)
LOC122347353 LOC107731845,LOC107659022,LOC107692422 coding downstream 135830 13469404 ~ 13471933 (+)
rpl5b rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 coding downstream 202937 13536511 ~ 13542567 (+)
atp1b1a NA coding downstream 264965 13598539 ~ 13607514 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding downstream 305420 13638994 ~ 13644273 (+)
G44872 NA non-coding upstream 203 13313553 ~ 13313854 (+)
LOC122346816 NA non-coding upstream 210491 13101279 ~ 13103566 (+)
G44640 NA non-coding upstream 218147 13093856 ~ 13095910 (+)
G44615 NA non-coding upstream 229827 13083380 ~ 13084230 (+)
G44622 NA non-coding upstream 614480 12664820 ~ 12699577 (+)
G44873 NA non-coding downstream 1615 13335189 ~ 13335542 (+)
G44869 NA non-coding downstream 3344 13336918 ~ 13338450 (+)
G44874 NA non-coding downstream 5460 13339034 ~ 13339305 (+)
G44876 NA non-coding downstream 8902 13342476 ~ 13342840 (+)
G44879 NA non-coding downstream 11690 13345264 ~ 13345944 (+)
G44645 NA other upstream 204691 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 231938 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 508357 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 787100 12521773 ~ 12526957 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 1154158 12154268 ~ 12159899 (+)
G44887 NA other downstream 60655 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 638599 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1902591 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 2025287 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 2231407 15564981 ~ 15566668 (+)

Expression


Co-expression Network