lrrc40 (lrrc40,LOC107709203,LOC107590628)


Basic Information

Item Value
gene id lrrc40
gene name lrrc40,LOC107709203,LOC107590628
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13981225 ~ 13985829 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242268.1
TACAGTTTACAATAGACGTTTACTTCACAACACTACAACCTCATTCACGTTTACAGGTGTTTTACTCTCGCATTTCGCATTCATGTCTCGTTTAAAACGAGGAGCACATGTGGACTCTAGAGCGGGATTTAGGCAGGAGAAAGAGGACTGTCCTGTCCCGTACGGTTTACTGAAAGCTGCTAGAAAGAGCGGGCAGCTCAATCTGTCCGGGCGCGGTCTGACTGAAGttcCTCAGAGTGTGTGGAGGCTGAATGTAGACACACCTCAGGAAGCTCAGCAGAACTTGTCATTTGGAGCCGCAGATCGATGGTGGGAACAGACAGATTTGACCAAACTTCTGCTGTCCTCCAACAAACTCCAGAGCCTCTCTGAAGACGTCAAACTCCTCTCTGCCCTGGTGGTGCTGGATATCCATGACAATCAACTAAACTCACTGCCAGATTCTGTTGGAGATCTAGAGCAACTACAGAAGCTCATATTGAGTCACAATAAACTGACAGGCCTGCCTTCGGGTCTTTGGAGACTTACAAACCTGCGATGTCTTCATCTACAACAGAATCTGATCGAACACATTCCCCAGGATTTGGGTCAGCTGGTGAATTTAGATGACCTTGATCTTTCCAACAATCATCTAATGGACGTTCCAGAAAGCCTGGCGCACCTGAAAAATCTTGTGAAATTGAATTTGTCCTGCAACAAGCTCAAGAGCCTCCCTCCTGCCATCAGCGAAATGAAAAACCTGAAAATGCTGGACTGTTCCCGGAATCAACTGGAGAGCATTCCTCCTGTCTTGGCTCAGATGGAGTCCCTTGAGCAGCTTTACTTGAGACATAACAAGCTACGCTTCCTTCCTGAACTGCCCTGCTGTAAAACACTCAAGGAGCTCCACTGCGGGAACAACCAGATTGAGGTATTGGAGGCAGACCATTTGAAGCACTTGAGTGCTCTGAGTTTCTTGGAGCTCCGAGATAACAAGGTGAAAGGTCTTCCTGAAGAAATAACTCTACTGCAAGGCCTGGAGCGGCTGGATCTTACTAACAATGACATCAGCAGTCTGCCGTGTGGACTTGGCACATTACCCAAGCTGAAGGCTTTGTCTCTGGAGGGCAATCCGCTGAGGTCCATCCGCAGAGACCTCCTGACTaaaGGCACTGGTGAGCTCCTGAAATATCTCCGAAGTCGAGTACAAGAGCAACCAGATGGGGGCTCGAAAGAAGAGCCAAAAACGGCAATGACCCTCCCGAGCCAAGCTAAAATCAATGTGCATGCCATCAAGACTCTGAAAACACTAGACTACAGTGAGAAGCATGAGGCGTCCATCCCAGACGAGGTGTTTGATGCAGTTGACGATAGTCCTGTGGCCAGTGTAAACTTCAGCAAAAATCAGCTGACCGAAGTTCCTTCCAGAATTTTGGAGTTAAAGGACACCCTAGCAGACATCAATCTTGGGTTTAACAAGCTAACAACCATTCCGCTGGACTTTTCCAGGTTAAAACAACTGGTACATATAGATCTCAGaaacaacCTGTTGATCTCACTGCCAGTGGAGTTGGAAGGCTTGAACAAGTTGCGGAGTGTCATCATCTCTTTTAATCGCTTCAAGTCATTTCCAGAAGTGCTGTACCGCATCTCATCCCTTGAGACCATTTTAATCAGTAACAATCAAGTTGGAGGCATTGATCCAGTACAAATGAAGACCCTAAATAATCTGTCTACTCTGGATCTGTCCAACAATGATATAATGCAAGTGCCACCGGAACTTGGCAACTGTACCAGTCTGAGGGCTCTAATGCTTGATGGGAATCCTTTCCGTAATCCAAGAGCTGCCATCCTCAGTAAAGGAACAGATGCTGTCCTTGAGTATCTCCGAAGTCGTATTCCAACATAATCTTCATAAGTTTAATGTTACTTTAACAATCGTTGATAGACGATCAATTCTTGTGCCATAATACTTCCTTTGCACTCCCTGACcgtataaaacaataataaacaatttcCTGCCACTTTA

Function

symbol description
lrrc40 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Orthologous to human LRRC40 (leucine rich repeat containing 40).

NR:

description
leucine-rich repeat-containing protein 40

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242268.1 True 2008 mRNA 0.46 15 13981225 13985829

Neighbor

gene id symbol gene type direction distance location
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding upstream 9322 13867877 ~ 13971903 (+)
ptmaa NA coding upstream 123325 13854242 ~ 13857900 (+)
phb2b phb2b,LOC107692360,LOC107591156,LOC108427714 coding upstream 157433 13820119 ~ 13823792 (+)
pde6d pde6d,LOC107590678,LOC107591155 coding upstream 161306 13813916 ~ 13819919 (+)
usp13 usp13,LOC107659032 coding upstream 258791 13697792 ~ 13722434 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding downstream 93799 14079628 ~ 14116522 (+)
trnag-ucc_2 NA coding downstream 95104 14080933 ~ 14081004 (+)
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding downstream 131962 14117791 ~ 14121182 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding downstream 147512 14133341 ~ 14170086 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding downstream 206756 14192585 ~ 14197319 (+)
G45070 NA non-coding upstream 120616 13860255 ~ 13860609 (+)
G45056 NA non-coding upstream 144406 13836607 ~ 13836819 (+)
G44998 LOC102783117 non-coding upstream 319128 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 323459 13656192 ~ 13657766 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding upstream 330342 13650115 ~ 13650883 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding downstream 6916 13992745 ~ 13996966 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding downstream 30606 14016435 ~ 14128344 (+)
LOC122347615 NA non-coding downstream 143518 14129347 ~ 14131078 (+)
G45112 NA non-coding downstream 228382 14214211 ~ 14215282 (+)
G45095 pde4b,LOC107659050 non-coding downstream 277772 14263601 ~ 14286676 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 939 13972173 ~ 13980286 (+)
G44887 NA other upstream 571313 13394229 ~ 13409912 (+)
G44645 NA other upstream 871859 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 899106 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1175525 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1250336 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1373032 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1579152 15564981 ~ 15566668 (+)
G45894 NA other downstream 3200879 17186708 ~ 17187308 (+)
G46022 NA other downstream 4009362 17995191 ~ 17996717 (+)

Expression


Co-expression Network