cldn34a (cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192)


Basic Information

Item Value
gene id cldn34a
gene name cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14117791 ~ 14121182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242269.1
CAATATAAATACGACGCTATTGCTGTCAAGCGTTTCGTTACCGTGAGAAGGCGCGTTCAATTCAGGGACGTTCTCAATTAATATACCACAAAACACCTTTCAACTCACCATATGGCtaaataatacacaagtttATGCTCGAGAAGTTATTTCCACTCGTTTCGTTTGAGGGTGAGGATCCTGTACGGTGTCAGATGAAGTGATTTACAGGATCCTCCGGAGCTCAAAGCACTTCACAGCCATGCTCCTGAAGGACGGCGTGCAGACCTGAGGAGGAAACATACATCACCTGGTGTCAGGACCGTTAGCAATGGCTTCCCTTCCCCAGTCAGTCCACTGTCAGTTTGCGGGTCTAGTGCTTGGGTTTGTAGGATGGATCATGACCTCCTCCGTTTCTGGGGTGAACGACTGGAGGATATGGTACGTGGACAATCGGACGGTCATCACCGGAGGACTGGCCTGGGTGGGAGTGTGGCGGGTCTGTTTCAACAGCCACGTTTTGGATTCAGCTGAGATCTGCAAAAGCATCAGCCTCACAGATCCGTTCACCCCACCAGAAATAGCCGCCGCTCAGGTGCTTTGCATGGCCGCTGTTGGCGTGGGGGTGCTCGCCATCCTGGTGGCGGGACACGCGGTGAGGAACGCCATCTTCGGGGTAGACGGTGTCAGGTTGATCTTTGTGACGGCGGGCTCCTTGTTCTGGCTGACTGCAGCGTGTTCGCTGGTCCCCGTCTTTTGGAATATGAATTCCGTGCTGGCGAATCTCACTATAGACTTCCCTCCGGACTTCTACTTGCCTGCAGCGCCGGTGAAACAGGAAGTGGGTCCGGGGATCGGCATCGGGATCGGTTCGGGTTGCCTGCTCATTGTGAGTGGACTACTCTTAATGTGCTACAGGTATCCCAAAACCCAGATCCCTAAGAGTGAAGAAACAGGACATTTTGACAACAACCCAACAGACGAAGGCTTTCTTGGTGTGATTAAAGAGAGTACGGATGAGGGTATGATCAACCCAGTGTATGAAACAGAAAAGCTTTAACAGCCTATGGAAGGACGCTGAAGGCTCTGAGCACAGTTTCTTAAAATCAGTTTGAggacaaattgtatttttgaggACTCCAAACCAAATAtctaaatacagtatatttaaatgaa
>XM_043242270.1
CCAATATAAATACGACGCTATTGCTGTCAAGCGTTTCGTTACCGTGAGAAGGCGCGTTCAATTCAGGGACGTTCTCAATTAATATACCACAAAACACCTTTCAACTCACCATATGGCtaaataatacacaagtttATGCTCGAGAAGTTATTTCCACTCGTTTCGTTTGAGGGTGAGGATCCTGTACGGTGTCAGATGAAGTGATTTACAGGATCCTCCGGAGCTCAAAGCACTTCACAGCTTATCCTGGAACATTCCACAACCCCAGCCATGCTCCTGAAGGACGGCGTGCAGACCTGAGGAGGAAACATACATCACCTGGTGTCAGGACCGTTAGCAATGGCTTCCCTTCCCCAGTCAGTCCACTGTCAGTTTGCGGGTCTAGTGCTTGGGTTTGTAGGATGGATCATGACCTCCTCCGTTTCTGGGGTGAACGACTGGAGGATATGGTACGTGGACAATCGGACGGTCATCACCGGAGGACTGGCCTGGGTGGGAGTGTGGCGGGTCTGTTTCAACAGCCACGTTTTGGATTCAGCTGAGATCTGCAAAAGCATCAGCCTCACAGATCCGTTCACCCCACCAGAAATAGCCGCCGCTCAGGTGCTTTGCATGGCCGCTGTTGGCGTGGGGGTGCTCGCCATCCTGGTGGCGGGACACGCGGTGAGGAACGCCATCTTCGGGGTAGACGGTGTCAGGTTGATCTTTGTGACGGCGGGCTCCTTGTTCTGGCTGACTGCAGCGTGTTCGCTGGTCCCCGTCTTTTGGAATATGAATTCCGTGCTGGCGAATCTCACTATAGACTTCCCTCCGGACTTCTACTTGCCTGCAGCGCCGGTGAAACAGGAAGTGGGTCCGGGGATCGGCATCGGGATCGGTTCGGGTTGCCTGCTCATTGTGAGTGGACTACTCTTAATGTGCTACAGGTATCCCAAAACCCAGATCCCTAAGAGTGAAGAAACAGGACATTTTGACAACAACCCAACAGACGAAGGCTTTCTTGGTGTGATTAAAGAGAGTACGGATGAGGGTATGATCAACCCAGTGTATGAAACAGAAAAGCTTTAACAGCCTATGGAAGGACGCTGAAGGCTCTGAGCACAGTTTCTTAAAATCAGTTTGAggacaaattgtatttttgaggACTCCAAACCAAATAtctaaatacagtatatttaaatgaa

Function

symbol description
cldn34a Orthologous to human CLDN34 (claudin 34).
cldn34 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane.

NR:

description
PREDICTED: claudin-34

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242269.1 False 1155 mRNA 0.50 3 14117792 14121182
XM_043242270.1 True 1184 mRNA 0.50 4 14117791 14121182

Neighbor

gene id symbol gene type direction distance location
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding upstream 1269 14079628 ~ 14116522 (+)
trnag-ucc_2 NA coding upstream 36787 14080933 ~ 14081004 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 131962 13981225 ~ 13985829 (+)
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding upstream 145888 13867877 ~ 13971903 (+)
ptmaa NA coding upstream 259891 13854242 ~ 13857900 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding downstream 12159 14133341 ~ 14170086 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding downstream 71403 14192585 ~ 14197319 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding downstream 374285 14495467 ~ 14523316 (+)
LOC122347575 NA coding downstream 587326 14708508 ~ 14712351 (+)
LOC122347452 LOC107692384,LOC107739088 coding downstream 659744 14780926 ~ 14790192 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding upstream 120825 13992745 ~ 13996966 (+)
G45070 NA non-coding upstream 257182 13860255 ~ 13860609 (+)
G45056 NA non-coding upstream 280972 13836607 ~ 13836819 (+)
G44998 LOC102783117 non-coding upstream 455694 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 460025 13656192 ~ 13657766 (+)
LOC122347615 NA non-coding downstream 8165 14129347 ~ 14131078 (+)
G45112 NA non-coding downstream 93029 14214211 ~ 14215282 (+)
G45095 pde4b,LOC107659050 non-coding downstream 142419 14263601 ~ 14286676 (+)
G45119 pde4b non-coding downstream 176449 14297631 ~ 14298231 (+)
G45121 NA non-coding downstream 198024 14319206 ~ 14320343 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 137505 13972173 ~ 13980286 (+)
G44887 NA other upstream 707879 13394229 ~ 13409912 (+)
G44645 NA other upstream 1008425 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1035672 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1312091 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1114983 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1237679 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1443799 15564981 ~ 15566668 (+)
G45894 NA other downstream 3065526 17186708 ~ 17187308 (+)
G46022 NA other downstream 3874009 17995191 ~ 17996717 (+)

Expression


Co-expression Network