tatdn2 (LOC107673616,LOC107585107,LOC107711037)


Basic Information

Item Value
gene id tatdn2
gene name LOC107673616,LOC107585107,LOC107711037
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19786424 ~ 19791450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242323.1
TATAATCGACAAGTGCACTTGTAAATCAAATTAAGCGTCTCCTTCCTTATTCCCTCAAATCATAAATACGTGCTAAATATGTGCACCCTCCATACTCGGTACGTCTCAAACTAAGCGCACTATGCAACGCTGTCTGGGGTCCAGTAAGTACGATGAACCGCAAAAGGGAAAAGGTTAAGTTTACATGGCTGGATAAAGCCAAGGATTCTCCCAGAAAACTCATGAAGAACAGTGTGGGTGTGGCACAGCCAACATGCTGGGATGGAGATGATCAGGACGGTGGTATAAGAGAGGTTTGCTCTCCTGGCCTGAACACGTCTACGGGCTCAGTTGAATTGAGCGACATGGAGAACATGTGTCTCAGCACCCCACTTAGTACACCCAAAGCACGCTTAAAACTGACTGGACGCCACAGAGcactgttgaaaaaaaacagtccTGGTGCGGACACTGTTTCAGGACAGTCCTCTGTTGGCCCTTCACCACCCTCTGCTGGAAAGAAATGCAGGAGTCCAGAAGAAGGGCAGAAAGTCATTCTCCTCAAAGCGCTAAGTGATGCAATGGGGAATGCAAACAAAACGTCATCAGTTGGTGGGCCTAAAAGTCCTTCTGCAAAGAAAACCCCAGACATGCTTAAAAAGGCAATTGAGGAGAAAAGCAGATCTGAACTTGACTGCTGCTCATTCAGTGGGAAGATTGAACGACTGAGCGCCGCTACAGATGACGAGCCTCTCTCGCTGGACTTCATAGACACAGAAGATGATGGGACAGAAATAATGCTGGATACCAGGAGTGTGATTCTAAAGCGACCAGAATCGCCGGACTGGTCAGATGTTGAGGACTCCGAGCAGGTGGAAGTCTTCTCACAGGATGAGTCTTTCGAAACAAAGGGGCGTCAAACAGCTGTGCTTAAAAGGGATTGTGAGTTTGTGGAATATAATAACACTCTTCCAGCTTTATGCCACCCTTACTCTTTATCATCAGCTTTAGAACCAGAAGTGCATAATAGTTCCCCAACCGTGGAGCTTTTGTCAGAGCATTCAGCTCAGAATACAGCCTCTGCCCTGGAGCCCCCTAAGAGCTGCACAGTGAGGCGGTCCCTCAAATTACAGGAGTCTGTCATCAGCTCTTCTCCGCTGGTCGACGTTTTCTCCGGTCTCAGAACATTTACATCCTCCCCATATACACCCGGTTACTGGAATTACTCGCATCTTACTCCACGCAGGACTTCAGAATCAAATATTTATGCGTCTTCACCGATGCTCATCGCTGATGACGTTGCCACTCGCAGGATGTCTCTTGGTTCGGAGCCTCTCTGGCTGTCAGATTTGAACTATTCACGAGCGGATTCCGCAGGATTCATTGACACGCACTGTCACCTTGATATGCTCTATGGGAAGTTGAGTTTTCAGGGAAGTTTCCAAAGGTTTCAGAGAATGTACGCTAGTACTTTCCCAAAGGAGTTTAAGGGCTGCATCGCGGACTTCTGCAACCCACGAATCACTGAGAAAGAGGCTATCTGGCAAGGGCTGCTAGGAGAGGAGAAAGTATGGGGAGCCTTTGGTTGCCACCCGCATTTTGCCAAGGAGTATAACCACGTTTATGAGCAAAGCATCATGAGTGCTATGCGTCACCCTAAGGCCATTGCATTTGGAGAGATTGGTTTGGATTACTCGTATAAGAATTCTACCGAATCGTGGAAGCAGAAGGAGGTGTTTGAAAGGCAGTTGCAGTTGGCCGTCTCTCTCCGGAAGCCTCTTGTCATACATTGTCGTGATGCGGATGATGATGTGCTGAAAATTATGAAGAAGTGTGTCCCCTGGGATTACAAAATACACAGACACTGTTTTACCAACAGCTATTCTGTGATCGAGCCGTTCTTGAGTGAATTCTCTAACCTGTGTGTGGGTTTCACTGGACTGGTGACGTATCATCACGCTGCAGAGGCTCGAGACTCTGTGAGGAAAATCCCACTCAACAGAATCTTACTGGAGACGGATGCACCATATTTCCTACCCAGACAGGTGCCAAAGTCCACATGCAGGTTTGCTCATCCTGGTATGGGCATACACACGCTGCATGAGATTAGTCTGCTGAAGGAAGAGAGCCTAACCACAGTACTGCAAACAGTCCGGCAAAACACCAGACATGTATACGGTCTGTGATGAGCAACTGAAGTCCTTGCCATCTTAGTCCAGCTATCATTTAGCTTTGTCTTGCTAAAAAGGTTAACATGAGTGTGTTCAAATAAGTGTATCAGCATTAATGCTTAAGTTTTGTAAGTGTTGTAGGGAATGTCacatctgttaaaaatgttaaaataattttaatatctcttcggttttgttttaaaatggttcTTGTTCTCAGGATTCTTTTGTCGTGTATCTGCATGCATTTTTAGTTATGTATGCTTGTAAGACATAAGTGACATAAAATGCTGGCTTGTGTCTGTTAGAATAAGTCATTTTTTCCTTACACAATCaatgtttatacaaaaataaaatgtacaca
>XM_043242324.1
GTGTTGGCAAGAGAGAACGCGTCGCTAATTACATACGCATGCGGTCCACCTGAGCTTTCTTCATCCGTATAGGCCTTAAGGATTGTAAGATTATCTTTGTCGTTGCTTGTACGATGAACCGCAAAAGGGAAAAGGTTAAGTTTACATGGCTGGATAAAGCCAAGGATTCTCCCAGAAAACTCATGAAGAACAGTGTGGGTGTGGCACAGCCAACATGCTGGGATGGAGATGATCAGGACGGTGGTATAAGAGAGGTTTGCTCTCCTGGCCTGAACACGTCTACGGGCTCAGTTGAATTGAGCGACATGGAGAACATGTGTCTCAGCACCCCACTTAGTACACCCAAAGCACGCTTAAAACTGACTGGACGCCACAGAGcactgttgaaaaaaaacagtccTGGTGCGGACACTGTTTCAGGACAGTCCTCTGTTGGCCCTTCACCACCCTCTGCTGGAAAGAAATGCAGGAGTCCAGAAGAAGGGCAGAAAGTCATTCTCCTCAAAGCGCTAAGTGATGCAATGGGGAATGCAAACAAAACGTCATCAGTTGGTGGGCCTAAAAGTCCTTCTGCAAAGAAAACCCCAGACATGCTTAAAAAGGCAATTGAGGAGAAAAGCAGATCTGAACTTGACTGCTGCTCATTCAGTGGGAAGATTGAACGACTGAGCGCCGCTACAGATGACGAGCCTCTCTCGCTGGACTTCATAGACACAGAAGATGATGGGACAGAAATAATGCTGGATACCAGGAGTGTGATTCTAAAGCGACCAGAATCGCCGGACTGGTCAGATGTTGAGGACTCCGAGCAGGTGGAAGTCTTCTCACAGGATGAGTCTTTCGAAACAAAGGGGCGTCAAACAGCTGTGCTTAAAAGGGATTGTGAGTTTGTGGAATATAATAACACTCTTCCAGCTTTATGCCACCCTTACTCTTTATCATCAGCTTTAGAACCAGAAGTGCATAATAGTTCCCCAACCGTGGAGCTTTTGTCAGAGCATTCAGCTCAGAATACAGCCTCTGCCCTGGAGCCCCCTAAGAGCTGCACAGTGAGGCGGTCCCTCAAATTACAGGAGTCTGTCATCAGCTCTTCTCCGCTGGTCGACGTTTTCTCCGGTCTCAGAACATTTACATCCTCCCCATATACACCCGGTTACTGGAATTACTCGCATCTTACTCCACGCAGGACTTCAGAATCAAATATTTATGCGTCTTCACCGATGCTCATCGCTGATGACGTTGCCACTCGCAGGATGTCTCTTGGTTCGGAGCCTCTCTGGCTGTCAGATTTGAACTATTCACGAGCGGATTCCGCAGGATTCATTGACACGCACTGTCACCTTGATATGCTCTATGGGAAGTTGAGTTTTCAGGGAAGTTTCCAAAGGTTTCAGAGAATGTACGCTAGTACTTTCCCAAAGGAGTTTAAGGGCTGCATCGCGGACTTCTGCAACCCACGAATCACTGAGAAAGAGGCTATCTGGCAAGGGCTGCTAGGAGAGGAGAAAGTATGGGGAGCCTTTGGTTGCCACCCGCATTTTGCCAAGGAGTATAACCACGTTTATGAGCAAAGCATCATGAGTGCTATGCGTCACCCTAAGGCCATTGCATTTGGAGAGATTGGTTTGGATTACTCGTATAAGAATTCTACCGAATCGTGGAAGCAGAAGGAGGTGTTTGAAAGGCAGTTGCAGTTGGCCGTCTCTCTCCGGAAGCCTCTTGTCATACATTGTCGTGATGCGGATGATGATGTGCTGAAAATTATGAAGAAGTGTGTCCCCTGGGATTACAAAATACACAGACACTGTTTTACCAACAGCTATTCTGTGATCGAGCCGTTCTTGAGTGAATTCTCTAACCTGTGTGTGGGTTTCACTGGACTGGTGACGTATCATCACGCTGCAGAGGCTCGAGACTCTGTGAGGAAAATCCCACTCAACAGAATCTTACTGGAGACGGATGCACCATATTTCCTACCCAGACAGGTGCCAAAGTCCACATGCAGGTTTGCTCATCCTGGTATGGGCATACACACGCTGCATGAGATTAGTCTGCTGAAGGAAGAGAGCCTAACCACAGTACTGCAAACAGTCCGGCAAAACACCAGACATGTATACGGTCTGTGATGAGCAACTGAAGTCCTTGCCATCTTAGTCCAGCTATCATTTAGCTTTGTCTTGCTAAAAAGGTTAACATGAGTGTGTTCAAATAAGTGTATCAGCATTAATGCTTAAGTTTTGTAAGTGTTGTAGGGAATGTCacatctgttaaaaatgttaaaataattttaatatctcttcggttttgttttaaaatggttcTTGTTCTCAGGATTCTTTTGTCGTGTATCTGCATGCATTTTTAGTTATGTATGCTTGTAAGACATAAGTGACATAAAATGCTGGCTTGTGTCTGTTAGAATAAGTCATTTTTTCCTTACACAATCaatgtttatacaaaaataaaatgtacaca

Function

NR:

description
putative deoxyribonuclease TATDN2 isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K03424 tatD; TatD DNase family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242323.1 True 2514 mRNA 0.46 7 19786424 19791450
XM_043242324.1 False 2475 mRNA 0.46 7 19786424 19791298

Neighbor

gene id symbol gene type direction distance location
ccdc174 ccdc174,LOC107673461,LOC107711012,LOC107585200,LOC107667317,LOC107582683,LOC107748410 coding downstream 1818 19780907 ~ 19784606 (-)
si:dkey-28n18.9 LOC107711013,LOC107585201,LOC107673478,LOC107582684,LOC107748409,LOC107667326 coding downstream 5669 19776312 ~ 19780755 (-)
ttll3 ttll3,LOC107711014,LOC107673469,LOC107585175,LOC107748395,LOC107667364,LOC107582793 coding downstream 38973 19740237 ~ 19747451 (-)
col7a1 col7a1 coding downstream 49927 19677759 ~ 19736497 (-)
LOC122346467 LOC107711040,LOC107585110,LOC107748417,LOC107582687,LOC107667408,LOC107673450,LOC100332423 coding downstream 110344 19668868 ~ 19676080 (-)
vhl LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681 coding upstream 1300 19792750 ~ 19794626 (-)
crbn crbn,LOC107711034,LOC107748399 coding upstream 3653 19795103 ~ 19800569 (-)
ppil1 ppil1,LOC107673584,LOC107667353 coding upstream 82523 19873973 ~ 19875768 (-)
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding upstream 114401 19905851 ~ 19908068 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding upstream 119544 19910994 ~ 19913842 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 179368 19606362 ~ 19607056 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 388694 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 543613 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 634730 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 737588 19044628 ~ 19048836 (-)
G46658 NA non-coding upstream 192 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 9793 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 42620 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 85862 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 176796 19968246 ~ 19968460 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 230482 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 636693 19115061 ~ 19149731 (-)
G46478 NA other downstream 730293 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 1068936 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 1078828 18706623 ~ 18707596 (-)
tomm6 NA other upstream 50029 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 51594 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 108222 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 207182 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 304574 20096024 ~ 20102459 (-)

Expression


Co-expression Network