p4htmb (p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396)


Basic Information

Item Value
gene id p4htmb
gene name p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19928355 ~ 19934425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242332.1
AGGAGACGAACAAGTGCGTTGGAGATGCGGCAGTTGTCAGGGGAATGGCGTCCCTCAAAAGTATAGTCAGCTGCGGATTCACTTCGAGATGTACAACTAAGGAAGCTGGCAGATAAATTCTAATCATTACATgcactgctaaaaaaaactcTTCGCAAGGATTTTAAAGAGAATGAATTTCAAAATGGTGCGTTGGCGCAACCGCCCGCAGGATACCAGAAGCTGCGCAGTTGCTATAATCACGCGTCTCGATGTAAACAAGAGAGGGAATGTTGACAACTGGAAGTGCTGAGTAAGCCAGAGAGTGTCATGCTACCACAAGCCGGAGATCGATAAAAACCTCGTCTGCCAAAATGATGGAAGCCCAGGACATTATTGAGGAGGATGACACCGCAGCATCagcaccatcatcatcatcagcgccGCCACCGCGAGCTCTGCCCCGTCAGCGCGTTTCTCTGCAGAAGAGCAGCGTGTGTTCTCGCTCCTACTTTATGGTGGTGATTTTTTTCCACGTTTATATAATCAATGTCATTGCACTTCTGCTCTACGTTCATTACAATAACGGATCTAACGCGATAACGGCAAACCGGGATTTTACAAGGAGAGATAACAGTCATAAAGTTACCGGAGCATCTGACCCGCAGCCCCCTGCAGACTCGGGCTTCCCTCGAAATATGTATCTTCCTCGCATTGAAGGAATACGGgtggGCCATGTCCAGAAAGTGTCACTGGTGCCAGGGAAAGTCCATGAGATGAAGACACTCAGTCTAAAGCCCCTTCTGTTTGAGATCCCTGGGTTTCTGTCAGAGGAGGAGTGTGGTGTAGTTGTGCGTCTGGCTCAGCTGAAGGGTTTGATGGAGAGTCAGGTTATGGTCCCTGAAGGTCAAGAGGAACTTAATCAGCAGCTTAACCTCAGTCCTGAGGAAATCTTCAATTTCCTTGACCTCAATCAAGATGGCCAGCTGCAACCGCATGAGATTTTGACACATTCTCGAGTGAGAGATGGAATCTGGTTAACTTCTGAAAACCTTAAGGAAATCTATGATGGCCTAAAGGTTGATCAGGATGGAGATGGTCTTTTAAATTTAGAGGAGTTTAGGCATCTGAAAAGTGATGCCTTTCAGCGTTTTTTGCTTCAGCGTGGGGTGGAGAGGAGTCAGCTGGTGAGGAACAGCAGACACACCTGGCTCTACCAGGGTCAGGGAGCACATCAGGTTCTTCAGGACCTCCGCAAAAGAGTCACTCGTTTAACGCGACTACCATCCTCACTGGTGGAGTTAAGTGAACCTCTACAAGTGGTGCGTTATGAGCAGGGTGGCCATTACCACGCTCATCATGACAGTGGGCCAGTGTACCCTGAAACAGCTTGCACACACACTCGCCTCGCTGCCAATACCACCTCCCCATTCCAGACGTCCTGCAGGTACATCACAGTTCTGTTTTACCTTAATAATGTAGAAGAAGGGGGCGAGACCACCTTTCCAGTGGCAGATAATAGGACTTACGAAGAAGCGTCACTGATACAGAATGATGTGGATCTGTTGGACACCAGGAAACATTGTGATAAAGGCAACCTGAGAGTGAAGCCCATTAAAGGGACGGCAGTTTTCTGGTACAACTATCTATCTGATGGTAGAGGTTGGGTTGGTGAACAGGACGAGTACTCTCTTCATGGTGGCTGTGTGGTGACACGTGGGACTAAGTGGGTTGCCAATAATTGGATCAATGTCGATCCAGACTACCAGCGGCAGGCACGCTACCAACAGTTCGTTTCTCAACAACAAGAGACGCAAGAGCAAGAAGAACTCATGTCAGAACTGAACTCAGACCAGCACATAGAAAGACACCAAGAcctataaacacatacatataaatccAGGTACAACAATGCACATATTTACACATTCACTTCTGTGTTACAATCTATGTATAGTCATTCACTTCCTCCTTCACACACGCATTCAGGCACAGTTCATTGCCTCTGCATCACTCATACACCCTGAAGCACTGACCTCGtaccaacaaacaaaacaaacaaaagcaccCCCTCCCCTTTGTACTTTATGTTTGGTTTGCTCTTCCCTAAATACAGTTGCACACTATAGAAATGTAGCCCTACCAACATTTCCTCATATTCAGAATTGAATGAGCTTTACTCAATCTCAGCGGTCCCAGTGTTGAGGCTGGAACTTTTGTTGGGTTGGATTCAGGGATAAACAGCCTGGGATTTATGCAATTGTGAAAGACAATGCTACTGTTCCTAATGTAGATATTTGAtggcattattatttattttttcatgggAATGCAGCCATATTCAGCGACTTTGTTTACACACAGAAAGACACTCTACTGTACCTTCCAAAGGCCGTACACACCGCAGCTAAATGTTAATGCATCGATAGTAAATAGTGCATACGAGATTTGTGGCTCTTTACTCTATGTGTTTTAACTTGCGATTTCGGTGACATGTAGTAAATAAACTGCTGTCAGTAAGGGCTGCATGACTAATCGGAAAAAAAATCACGAACATGATTCATACATAAATGCGATCTTATTTTGAAATGGCGGCAACACATTCCATGTCCTGTCTGAAAGGCACATAATGTGGACGGTGCACAGATGATCAACACCACTAATCTCTACAATCATCTCAAGCGTCACCACAAAATAGGAGAGGTTCTTGagtgcaaaatatttttgttgaaaaatttGAATCGTGTATGAAAATTATGATCTTAATTCCCATTGAGAAAAATCGTGATTCACATTTTAGCAAGAATTGTGCAGCCCGACTGTCAGTGTACAAGCAAACTTCACAATTGCTGGAGGATGTAGTGTGTACTGGCCAAAGAGTgtggaaaaaatgtatgttattgcTTTCTACTGAAGTGACATTTACACTGACATCTAAATCACATAACACTTAAGGAAAGTTATCTGCAGGGACACAGTCAGCATTGACTAGTTATGTCAATGGACTACAGGTTAGTTTAATTGtaactattaaaaattattaagattttaacCTATGTAACATCTAGTCAGCCTCCATCTCTGCCAGGATGTTTCTTACACTTATTTCCTCTCAGATGTTCCTGAAAAGAAGCATGTAAAACTTGCACAATCTTGTATACTTTGTttggatttaatttattttgtaatgttttttctttgtcaatTGCAGTGCATCCAAAGACTTGACTGAagttaacttattttatttatttgttggattgttgttaaaatgcacagaatcactttttgtcaaataaattaaaccaaCCAATCATA

Function

symbol description
p4htm Enables 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within regulation of erythrocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane prolyl 4-hydroxylase-like

GO: NA

KEGG:

id description
K06711 PH-4; hypoxia-inducible factor prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242332.1 True 3297 mRNA 0.43 10 19928355 19934425

Neighbor

gene id symbol gene type direction distance location
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding downstream 7077 19918053 ~ 19921278 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding downstream 14513 19910994 ~ 19913842 (-)
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding downstream 20287 19905851 ~ 19908068 (-)
ppil1 ppil1,LOC107673584,LOC107667353 coding downstream 52587 19873973 ~ 19875768 (-)
crbn crbn,LOC107711034,LOC107748399 coding downstream 127786 19795103 ~ 19800569 (-)
LOC122347206 wu:fd14a01,LOC107575389,LOC108443910,LOC108254796,LOC107571573,LOC107705004 coding upstream 14887 19949312 ~ 19959657 (-)
arpc4 arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding upstream 26771 19961196 ~ 19964821 (-)
LOC122347402 LOC107673562,LOC107712070,LOC107584441,LOC105017189 coding upstream 30978 19965403 ~ 19966424 (-)
eefsec eefsec,LOC107584423,LOC107667374,LOC107568193 coding upstream 54494 19988919 ~ 19994672 (-)
rft1 rft1,LOC107584424,LOC107673548,LOC107721169,LOC107712099,LOC107568194 coding upstream 66675 20001100 ~ 20004685 (-)
LOC122347207 NA non-coding downstream 47767 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 90308 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 126089 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 136027 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 321299 19606362 ~ 19607056 (-)
G46803 NA non-coding upstream 33821 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 120441 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 193523 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 215122 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 239113 20173538 ~ 20174291 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 80923 19843044 ~ 19847432 (-)
tomm6 NA other downstream 85361 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 372413 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 778624 19115061 ~ 19149731 (-)
G46478 NA other downstream 872224 19055146 ~ 19056131 (-)
mustn1a mustn1a other upstream 64207 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 161599 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 227015 20161440 ~ 20166279 (-)
G46926 NA other upstream 594754 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1414194 21348619 ~ 21355381 (-)

Expression


Co-expression Network