LOC122347189 (LOC107584426,LOC107712092,LOC107673614)


Basic Information

Item Value
gene id LOC122347189
gene name LOC107584426,LOC107712092,LOC107673614
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19914974 ~ 19917755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242333.1
ATGAAGCCCAATGTCTGGAATATAAAGGAGATGTTGAATATCCCTGCAACGTCTGGAGGGATAAAAACTGGTAAGGGTCCTGGAACCAGTGACTACTCCAGCCTGAGTGACTCCCAGTTTCTCTTGGGCTCTCAAATGTGGCCTGACAATTCACAAGGGTTTACTCAGGAGATGAGTGGACAGAGCAAAGGTTCTCAGCATACCTCACAGGAAATGAAGGAAATTATGATGTCCAGCAGCTATAGCTCTAAGCCGCTGTTGTTTGGTGGTGATGGCAAAATCTCAAACTTCACCAGTAGCAAATATGTTGGCATGTTAGACAAAtttgaggaggagaagaagacccaagaaaaatatgaaagggAAATTCTCACTCATGGAATTCTACAACTGCAGGAATCTCTGGAAAATACCAGAGAGACTTTGTTAAATCGTATTGATGGAAGTAACGACATAACCAAAGTTGTAATGGAAAAAATTGGacactttttcaaaaCAGTTGAATGTTATTTAAACAGTGTGAAAGAAGGTATAACATATCAGTTTGAGACTCTGCAGAGCCGAACACAAATAGATATGGGAGACAGGGATGCCAAGtgCAGTCTGGCTGCAGAAGAGTTAAGCTCAGGCATGCTTAACCTCCAACAGGATCTGGAACATCTGAAAGCAGAGCAGAGCAAAGAGCAGGGCATGCTGGGAAAAATTCTGTCTCAGCTTAGCAATTTGATTTCTATTCACAAGCCGATGACAGGACCTGGCTCTGCTAGAATGATTGACAGTGAGGTTCAGACATCACCCAGTTTATTACAGAGGTTCTGTGTCATATTAGCTGAAAAAGAACACGAGAGCAAGATGATACGCAACAGGCCTGTCATTTATTCAGGAAAAGCAACAGAGCAGAACCAGTGTCCGCTTACAACACAGAAGACACGAAACAGAAATGCACATGCTCTGCCTGAAGAAAGACAGCAGACAGTAGTCACAGAGGAGGTTTCCTTGAATGCTTCACAGAGTTTATGGGGCACACAATTAGTCGAGAACATAGAGGACCATGGAGGACAGAAGCCTGAAAAACCACTGCAATTGAGAGAGAGCCGATTTGTCACTGATGCGATGCCACCACTAAAAATACCTAAGAGGCGCCAAAAACCACTGAATTATAGGGGGAAAAAGAGAGCCCTGGTTCTGCCCCAAAGACAgccggtaaaaaaaaaagaagcaagtTTTTCAAAGGGCAGCCAGCAGAATGAAGACCTTCAATTTGAACAAAAAGACAGAGAACCTTTGGCTTCTCTTTGTGGCAACTGGAACATGACCAAGTCTGTTGGAGGGGATCACCTAAAACTACAGCAGCAGGCGACTGTAGCACCAGTCAGTACGTGTGTAGCTGAACAACCACTAAACCCTTTCAGTTTGTGGTCTGAGGACACAGACAGCTCCCAACTGATGGTGGAAAATGAGGTTTTTGAACCAAAAGCTAGTGTCATAGAAGGAGAAGACGGCCTCTGGCAGCTTTTTGATTTCACTAATGACTCAGAATAAGATGCAGAATACTTCCATCCTGCATTCCTTCTGATTATACTTACATGTGCGAAATTATTTAGAGTATATcctatgttcattttttttttttaaatgttagaacTTGAAATTGCCTGTGAACATGCAAACCTTTCTTAGCTGTATACACATTATTCTTCTGTTGCTTTACCTTGTTGATTCTTTTTGAAGTATGGATTATAAAAGCATAAAGACAAATAGACAGACTTTGCTATATCTGAAAgaattttgttctgtttttctaaTGCCTTAGGCATGTCATATTCGagaaatttgtgttttttggtcTTACACACATTGTAGACAAATACTTAGTGTAACATCAATagatataaaatacttttaaaatatttttaaaactttgtttgACATAAATTTAGCCATGGTTAGGTT

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 36-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242333.1 True 1953 mRNA 0.41 8 19914974 19917755

Neighbor

gene id symbol gene type direction distance location
rereb LOC107673527,LOC107584416,LOC107568186,LOC107721179,LOC107712087,LOC107667365 coding upstream 15313 19889522 ~ 19899661 (+)
eno1b eno1b,LOC107721178,LOC107568188,LOC107712086,LOC108440571,LOC105889213 coding upstream 26125 19883454 ~ 19888849 (+)
frs3 frs3,LOC107673473,LOC107584505,LOC107712068,LOC107667350,LOC107568202,LOC107721202 coding upstream 52012 19850685 ~ 19862962 (+)
si:ch73-15b2.5 LOC107673501,LOC107712080,LOC107584503 coding upstream 72678 19838505 ~ 19842296 (+)
ddi2 LOC107712079,LOC107673502,LOC107667352,LOC107721177,LOC107584413,LOC107578835 coding upstream 76928 19831139 ~ 19838046 (+)
slc26a6l slc26a6l,LOC107712095,LOC107673476,LOC107584419 coding downstream 4769 19922524 ~ 19928344 (+)
si:ch211-157b11.8 si:ch211-157b11.8,LOC107712072,LOC107584432,LOC107673560 coding downstream 48868 19966623 ~ 19972433 (+)
gata2b gata2b,LOC107712071,LOC107673559,LOC107584431,LOC107721170,LOC107667331,LOC107568181 coding downstream 59316 19977071 ~ 19982743 (+)
ruvbl1 ruvbl1,LOC107673590,LOC107721190,LOC107568195,LOC107667375,LOC107712098,LOC107584430 coding downstream 77280 19995035 ~ 19999128 (+)
c6h1orf74 LOC107712101,LOC107584438,LOC107568182,LOC107721171,LOC107667327,LOC107673551 coding downstream 87049 20004804 ~ 20005960 (+)
G46640 NA non-coding upstream 115462 19799012 ~ 19799512 (+)
G46633 NA non-coding upstream 124635 19789698 ~ 19790339 (+)
G46632 LOC107673616,LOC107585107,LOC107711037 non-coding upstream 126124 19787935 ~ 19788850 (+)
G46631 NA non-coding upstream 127772 19786974 ~ 19787202 (+)
G46623 NA non-coding upstream 139822 19774706 ~ 19775152 (+)
G46711 NA non-coding downstream 31473 19949228 ~ 19949668 (+)
G46690 NA non-coding downstream 43454 19961209 ~ 19961985 (+)
G46722 LOC107673562,LOC107584441,LOC105017189 non-coding downstream 47504 19965259 ~ 19966466 (+)
G46726 NA non-coding downstream 73916 19991671 ~ 19999698 (+)
G46731 NA non-coding downstream 88409 20006164 ~ 20007343 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other upstream 41439 19866559 ~ 19873535 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other upstream 68426 19843047 ~ 19846548 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other upstream 128677 19784177 ~ 19786297 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other upstream 320966 19566011 ~ 19594008 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other upstream 567345 19262584 ~ 19347629 (+)
G46742 NA other downstream 169336 20087091 ~ 20095641 (+)
LOC122346811 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494 other downstream 714215 20631970 ~ 20661207 (+)
LOC122347404 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494,LOC107712119 other downstream 802662 20720417 ~ 20749398 (+)
oxtra oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 857243 20774998 ~ 20786533 (+)
G47187 cpt1b,LOC107559523,LOC107710383,LOC107686536,LOC107671150,LOC107599889 other downstream 1857653 21775408 ~ 21777713 (+)

Expression


Co-expression Network