LOC122347195 (LOC107584484,LOC107673448,LOC107712069,LOC107721173)


Basic Information

Item Value
gene id LOC122347195
gene name LOC107584484,LOC107673448,LOC107712069,LOC107721173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19905851 ~ 19908068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242340.1
GGTTTAACTCGTTTGAGTCACAGCTTAGAAGTATAATTCAAACTAGTGAAGAGCAGGGGAAGGCAGTTACACTTTACCAGAAGACCAAGACAGACAGGTTTGGGGAGAGACGACCATTCAAAGACCTGTTTTGGGaacttttcaaacttttcaGCCTTTATCTGAACCCATCtaaacaaagaagaagaaagcatctacaatataaaaaagtattctgTATTCCTCTTCTAagattttcttcTGTCCACACAAACAGGATGGAGGAACAGGAAGTATCTACAGCATCACGTACCAATTCAGTAAGGCACCAACACAAGACACTGGGCTCCGGTGACGACCAGGACGATGCCTGGGATGCCGGCCCGGAGTGTTCAATCTGCTTTTGTGCATACGACAACACCTTCAAGACACCGAAGCTTCTCACGTGTACCCATACCTTCTGTCTGGAATGTCTGTCTCGCTTTGTGACTATTTCACCAGAGCAGGACGGTACCCAGATCACCTGCCCTCTTTGTCGGCAGCCAACATCTGTACCTGAACACGGTCCTCCAGAGCTGGCCACCAGCCAGGAAGTTTTGGACCAACTTCCAAGCGACCTGCAACAAGTGGAGAACGTTTTTCTAGATGGAAAGAGACTGTGTTACTCGAACCCTATGATACCCAACTGCATCTGCATTGACATCGGGGAGCATAAACAAGAGGAGCCGCCGAGaacagaggagagaagagagggTTGTGGACACAGGCTGCTGAGATTCTTGGGTTTTTATGGAAACTGGAAAAGGCTTGTGGTCTTCATCATAGTGCTTATTGTGGTCTTATTCGTTATACTGTGGCCTCTCCAGTGCTTTATCATCTCAAACTCCATGTCACAATGCTTCGGAGAATCTCCAGCTACGGCCAGTGCTCCCAGACCTCCAGGGGGTAACTAAAACACACAGGTGGACACAATAAGGTTTTATTCAAGCCTGGAAACAGTTTCAGCTTCGTGAATTGCAAATAACTTTCAGGTTGTATGGACTTCAGTCTAAAAGCATGACTGATGAGCTAAAATCACAGCTATAACCTTTACAGCTTCATACAACAGCAAACCTGTATCGGTTAAAATTCGACTTTTTCATTTCAACTCAATATTTGTTGCATGAAATTTCATTGTCGTATCAGATACTTCCTAAATGccactgtaaatatttaaaattctctTCTGCGTTTAAAACAGATGAACAAAATAAGCACTAgagtaaaactttttaaacaccTTTTAACAGGATCCTGCTTGCCGGTTTGATTGCTTTGGCTGGAAAAGATCTTtgcacattttgtaaaatataaagccttcaatttattgtgtgtttatttgcaaaagtattcattaATTACGCATGTATATTAACAGAGTTTTcaaatttattgtattttcagaaaaaaaagtaaaatgtactgtaatcaaatgtttttttattaaaaatttctcaCTGTa
>XM_043242341.1
TATGGTTTAACTCGTTTGAGTCACAGCTTAGAAGTATAATTCAAACTAGTGAAGAGCAGGGGAAGGCAGTTACACTTTACCAGAAGACCAAGACAGACAGGTTTGGGGAGAGACGACCATTCAAAGACCTGTTTTGGGaacttttcaaacttttcaGCCTTTATCTGAACCCATCtaaacaaagaagaagaaagcatctacaatataaaaaagtattctgTATTCCTCTTCTAagGATGGAGGAACAGGAAGTATCTACAGCATCACGTACCAATTCAGTAAGGCACCAACACAAGACACTGGGCTCCGGTGACGACCAGGACGATGCCTGGGATGCCGGCCCGGAGTGTTCAATCTGCTTTTGTGCATACGACAACACCTTCAAGACACCGAAGCTTCTCACGTGTACCCATACCTTCTGTCTGGAATGTCTGTCTCGCTTTGTGACTATTTCACCAGAGCAGGACGGTACCCAGATCACCTGCCCTCTTTGTCGGCAGCCAACATCTGTACCTGAACACGGTCCTCCAGAGCTGGCCACCAGCCAGGAAGTTTTGGACCAACTTCCAAGCGACCTGCAACAAGTGGAGAACGTTTTTCTAGATGGAAAGAGACTGTGTTACTCGAACCCTATGATACCCAACTGCATCTGCATTGACATCGGGGAGCATAAACAAGAGGAGCCGCCGAGaacagaggagagaagagagggTTGTGGACACAGGCTGCTGAGATTCTTGGGTTTTTATGGAAACTGGAAAAGGCTTGTGGTCTTCATCATAGTGCTTATTGTGGTCTTATTCGTTATACTGTGGCCTCTCCAGTGCTTTATCATCTCAAACTCCATGTCACAATGCTTCGGAGAATCTCCAGCTACGGCCAGTGCTCCCAGACCTCCAGGGGGTAACTAAAACACACAGGTGGACACAATAAGGTTTTATTCAAGCCTGGAAACAGTTTCAGCTTCGTGAATTGCAAATAACTTTCAGGTTGTATGGACTTCAGTCTAAAAGCATGACTGATGAGCTAAAATCACAGCTATAACCTTTACAGCTTCATACAACAGCAAACCTGTATCGGTTAAAATTCGACTTTTTCATTTCAACTCAATATTTGTTGCATGAAATTTCATTGTCGTATCAGATACTTCCTAAATGccactgtaaatatttaaaattctctTCTGCGTTTAAAACAGATGAACAAAATAAGCACTAgagtaaaactttttaaacaccTTTTAACAGGATCCTGCTTGCCGGTTTGATTGCTTTGGCTGGAAAAGATCTTtgcacattttgtaaaatataaagccttcaatttattgtgtgtttatttgcaaaagtattcattaATTACGCATGTATATTAACAGAGTTTTcaaatttattgtattttcagaaaaaaaagtaaaatgtactgtaatcaaatgtttttttattaaaaatttctcaCTGTa

Function

NR:

description
PREDICTED: RING finger protein 223-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242340.1 True 1480 mRNA 0.41 2 19905851 19908065
XM_043242341.1 False 1459 mRNA 0.41 2 19905851 19908068

Neighbor

gene id symbol gene type direction distance location
ppil1 ppil1,LOC107673584,LOC107667353 coding downstream 30083 19873973 ~ 19875768 (-)
crbn crbn,LOC107711034,LOC107748399 coding downstream 105282 19795103 ~ 19800569 (-)
vhl LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681 coding downstream 111225 19792750 ~ 19794626 (-)
tatdn2 LOC107673616,LOC107585107,LOC107711037 coding downstream 114401 19786424 ~ 19791450 (-)
ccdc174 ccdc174,LOC107673461,LOC107711012,LOC107585200,LOC107667317,LOC107582683,LOC107748410 coding downstream 121245 19780907 ~ 19784606 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding upstream 2926 19910994 ~ 19913842 (-)
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding upstream 9985 19918053 ~ 19921278 (-)
p4htmb p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding upstream 20287 19928355 ~ 19934425 (-)
LOC122347206 wu:fd14a01,LOC107575389,LOC108443910,LOC108254796,LOC107571573,LOC107705004 coding upstream 41244 19949312 ~ 19959657 (-)
arpc4 arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding upstream 53128 19961196 ~ 19964821 (-)
LOC122347207 NA non-coding downstream 25263 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 67804 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 103585 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 113523 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 298795 19606362 ~ 19607056 (-)
G46803 NA non-coding upstream 60178 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 146798 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 219880 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 241479 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 265470 20173538 ~ 20174291 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 58419 19843044 ~ 19847432 (-)
tomm6 NA other downstream 62857 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 349909 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 756120 19115061 ~ 19149731 (-)
G46478 NA other downstream 849720 19055146 ~ 19056131 (-)
mustn1a mustn1a other upstream 90564 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 187956 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 253372 20161440 ~ 20166279 (-)
G46926 NA other upstream 621111 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1440551 21348619 ~ 21355381 (-)

Expression


Co-expression Network