c6h1orf159 (LOC107673608,LOC107712089,LOC107584440)


Basic Information

Item Value
gene id c6h1orf159
gene name LOC107673608,LOC107712089,LOC107584440
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19910994 ~ 19913842 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242344.1
CAGTGCGGTTTATTTTATTGATCAGGAAGTGAAGTACCGTTGAGAACAGATTTGTGACACATTAAAACTTGCGCTTAACAGGAGTAATCTCATCATGAGTAGAGTCTACTACATCCTCAGTGCTGCTCTTTTTGTGTTAGAAATTCCAGAGACCAAGGCACTGCTAGAAAACTCCAATGACTGTTGTGAAAGAATAAAGAGAATGAATGAAACCTGTGCGAATATTACACTCTGTGACTCTGGGCTCCTTCCAGTTCAGGAAAACAGTACAACATTTTGTGTGTCCTGTGACTCAACGGAGCAGGGGAATTCAACTTTACTTAACAATACAAAGACTAGTCACATTGTAGTACCTGTAATCACAGTGATTGGTGGTCCAGGGATAGCAGCTTCTGTCCTTCTAGGAACTCTACTGATCAGCCTGGGCCTCATCCTCTCAGTTGCATCTTTCTTTTACCTTAAGCGTTCCAACCGCCTCCCTGGTGTCTTCTACAGGCGCAATAAggCTTTTATATTCCAACCAAGTGAAACGGCTGTCATGATTCCTGAAGCTACATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAAAGGCCATCAGCAACATCAGCATCCAGCAGTGCTACTGTGGCCACAGGGGCAGTAACCAAGGTGTACAATGTGTGACCAGCCTCCAAGGGCCAGCTATGAGCCCCCTTTTAAAACACTAGTCTGTCCTATAGCACTGTTTTCTTATAGGATTTCcttttttggtgaaattttCCTTTGTAGGCTACATGAAGAACGATATGTCTTGATGTAGACTTTATCTTGGAAACCTTTTCTTTTCACGGAAGCcagttatttatttctatttatatatttttcacataatacgttgttcttttttttttttttttttaagagaccaGGTGTTGCACTACTAGAGTATTTTTGATTGTTAAGCTATAATTCAGTGTAGTAAGTTGTTTTTTCAATgaattttgtaatgtttatatttattaccagtatttttgtgtaatattgTACTTTTGAATCTTGTGACATTGAAACTAGGATCCC
>XM_043242345.1
TTGATCAGGAAGTGAAGTACCGTTGAGAACAGATTTGTGACACATTAAAACTTGCGCTTAACAGGCACTGCTAGAAAACTCCAATGACTGTTGTGAAAGAATAAAGAGAATGAATGAAACCTGTGCGAATATTACACTCTGTGACTCTGGGCTCCTTCCAGTTCAGGAAAACAGTACAACATTTTGTGTGTCCTGTGACTCAACGGAGCAGGGGAATTCAACTTTACTTAACAATACAAAGACTAGTCACATTGTAGTACCTGTAATCACAGTGATTGGTGGTCCAGGGATAGCAGCTTCTGTCCTTCTAGGAACTCTACTGATCAGCCTGGGCCTCATCCTCTCAGTTGCATCTTTCTTTTACCTTAAGCGTTCCAACCGCCTCCCTGGTGTCTTCTACAGGCGCAATAAggCTTTTATATTCCAACCAAGTGAAACGGCTGTCATGATTCCTGAAGCTACATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAAAGGCCATCAGCAACATCAGCATCCAGCAGTGCTACTGTGGCCACAGGGGCAGTAACCAAGGTGTACAATGTGTGACCAGCCTCCAAGGGCCAGCTATGAGCCCCCTTTTAAAACACTAGTCTGTCCTATAGCACTGTTTTCTTATAGGATTTCcttttttggtgaaattttCCTTTGTAGGCTACATGAAGAACGATATGTCTTGATGTAGACTTTATCTTGGAAACCTTTTCTTTTCACGGAAGCcagttatttatttctatttatatatttttcacataatacgttgttcttttttttttttttttttaagagaccaGGTGTTGCACTACTAGAGTATTTTTGATTGTTAAGCTATAATTCAGTGTAGTAAGTTGTTTTTTCAATgaattttgtaatgtttatatttattaccagtatttttgtgtaatattgTACTTTTGAATCTTGTGACATTGAAACTAGGATCCC

Function

NR:

description
PREDICTED: uncharacterized protein C1orf159-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242344.1 True 1063 mRNA 0.39 9 19910994 19913842
XM_043242345.1 False 970 mRNA 0.39 8 19910994 19913825

Neighbor

gene id symbol gene type direction distance location
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding downstream 2926 19905851 ~ 19908068 (-)
ppil1 ppil1,LOC107673584,LOC107667353 coding downstream 35226 19873973 ~ 19875768 (-)
crbn crbn,LOC107711034,LOC107748399 coding downstream 110425 19795103 ~ 19800569 (-)
vhl LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681 coding downstream 116368 19792750 ~ 19794626 (-)
tatdn2 LOC107673616,LOC107585107,LOC107711037 coding downstream 119544 19786424 ~ 19791450 (-)
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding upstream 4211 19918053 ~ 19921278 (-)
p4htmb p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding upstream 14513 19928355 ~ 19934425 (-)
LOC122347206 wu:fd14a01,LOC107575389,LOC108443910,LOC108254796,LOC107571573,LOC107705004 coding upstream 35470 19949312 ~ 19959657 (-)
arpc4 arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding upstream 47354 19961196 ~ 19964821 (-)
LOC122347402 LOC107673562,LOC107712070,LOC107584441,LOC105017189 coding upstream 51561 19965403 ~ 19966424 (-)
LOC122347207 NA non-coding downstream 30406 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 72947 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 108728 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 118666 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 303938 19606362 ~ 19607056 (-)
G46803 NA non-coding upstream 54404 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 141024 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 214106 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 235705 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 259696 20173538 ~ 20174291 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 63562 19843044 ~ 19847432 (-)
tomm6 NA other downstream 68000 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 355052 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 761263 19115061 ~ 19149731 (-)
G46478 NA other downstream 854863 19055146 ~ 19056131 (-)
mustn1a mustn1a other upstream 84790 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 182182 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 247598 20161440 ~ 20166279 (-)
G46926 NA other upstream 615337 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1434777 21348619 ~ 21355381 (-)

Expression


Co-expression Network