zgc:152986 (LOC107585105,LOC107711036,LOC107673557)


Basic Information

Item Value
gene id zgc:152986
gene name LOC107585105,LOC107711036,LOC107673557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19800666 ~ 19802004 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242346.1
ATTCGTTAGGCCCAGCAAGGTAACGTTAAACGAGTAGATCGTGTTaggctacattttttttcacaaatttatgAAGAGGCTGAAACAAGTGAACGAATCGTGTTCGTTAGCAGGTGGATGATGGCTACAGCAGAGCATTTATTCATAGTACTAACGTTATGCGTGTGTGGCTGTACGTGTCTGAGTGACTATTACTCACTGCTTGGAGTTTCTCACTCAGCATCTTCAAGAGAGATCAAGAAAGCGTTTCACAGGCTGGCCCTTAAACACCATCCTGATAAAAACCAAAGTCCCAATGCACAGCGGATCTTCACACACATTGCTCAAGCTTATGAAGTACTATCTGACAGAGAGAAGAGACGAGCCTATGATGAATTGGACCACCTAACTAACACTGATCAGGCCTGGGAGGGAAAGTTCAAGAAAGAGGATGTGGACCGTAATCCCTTTGCAGATGAAGGGACATTTCATAGTAAAAGGGGATTCCAGCGTTTTAGTTTAGAGGAGCTGCTTCATTCACTGCGGATAGATGATGACTTTTTTATGGGTGAACAACCTGGTTACGAAGGatggagttttatttttgggcctgagggtgatgatgatgaaaccGCCTTCCTCAGTGATCTTTTCAACATGCTTTAATTTCAAGTGTTTGTGTATCTTGACCACATTAAgttaatatatttcttaattgcATAAATAGCTAAATAGCTTTTAAAGTGCTTTGCATATTTACCTTGCtgttgtgtttattaaataaaacttttaattttaaa
>XM_043242347.1
GACGTTGAGTTAGAGtggttatttgtttgttatggtGCTGGGTTTAAGTCTGCTGATatttctgaatttcttttttcaacCTCGTGGATGATGGCTACAGCAGAGCATTTATTCATAGTACTAACGTTATGCGTGTGTGGCTGTACGTGTCTGAGTGACTATTACTCACTGCTTGGAGTTTCTCACTCAGCATCTTCAAGAGAGATCAAGAAAGCGTTTCACAGGCTGGCCCTTAAACACCATCCTGATAAAAACCAAAGTCCCAATGCACAGCGGATCTTCACACACATTGCTCAAGCTTATGAAGTACTATCTGACAGAGAGAAGAGACGAGCCTATGATGAATTGGACCACCTAACTAACACTGATCAGGCCTGGGAGGGAAAGTTCAAGAAAGAGGATGTGGACCGTAATCCCTTTGCAGATGAAGGGACATTTCATAGTAAAAGGGGATTCCAGCGTTTTAGTTTAGAGGAGCTGCTTCATTCACTGCGGATAGATGATGACTTTTTTATGGGTGAACAACCTGGTTACGAAGGatggagttttatttttgggcctgagggtgatgatgatgaaaccGCCTTCCTCAGTGATCTTTTCAACATGCTTTAATTTCAAGTGTTTGTGTATCTTGACCACATTAAgttaatatatttcttaattgcATAAATAGCTAAATAGCTTTTAAAGTGCTTTGCATATTTACCTTGCtgttgtgtttattaaataaaacttttaattttaaa
>XM_043242348.1
CGTTAGGCCCAGCAAGGTAACGTTAAACGAGTAGATCGTGTTaggctacattttttttcacaaatttatgAAGAGGCTGAAACAAGTGAACGAATCGTGTTCGTTAGCAGCATCTTCAAGAGAGATCAAGAAAGCGTTTCACAGGCTGGCCCTTAAACACCATCCTGATAAAAACCAAAGTCCCAATGCACAGCGGATCTTCACACACATTGCTCAAGCTTATGAAGTACTATCTGACAGAGAGAAGAGACGAGCCTATGATGAATTGGACCACCTAACTAACACTGATCAGGCCTGGGAGGGAAAGTTCAAGAAAGAGGATGTGGACCGTAATCCCTTTGCAGATGAAGGGACATTTCATAGTAAAAGGGGATTCCAGCGTTTTAGTTTAGAGGAGCTGCTTCATTCACTGCGGATAGATGATGACTTTTTTATGGGTGAACAACCTGGTTACGAAGGatggagttttatttttgggcctgagggtgatgatgatgaaaccGCCTTCCTCAGTGATCTTTTCAACATGCTTTAATTTCAAGTGTTTGTGTATCTTGACCACATTAAgttaatatatttcttaattgcATAAATAGCTAAATAGCTTTTAAAGTGCTTTGCATATTTACCTTGCtgttgtgtttattaaataaaacttttaattttaaa

Function

NR:

description
PREDICTED: dnaJ homolog subfamily B member 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242346.1 True 779 mRNA 0.40 3 19800666 19802004
XM_043242347.1 False 749 mRNA 0.39 3 19800802 19802004
XM_043242348.1 False 669 mRNA 0.39 3 19800669 19802004

Neighbor

gene id symbol gene type direction distance location
LOC122347196 NA coding upstream 26230 19771892 ~ 19774436 (+)
slc4a8 LOC107711038,LOC107673578,LOC107667363,LOC107585109 coding upstream 29788 19748843 ~ 19770878 (+)
endou endou coding upstream 240329 19556852 ~ 19560337 (+)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388,LOC107582794,LOC107673598 coding upstream 254792 19532334 ~ 19545874 (+)
c1ql4b c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC107748412,LOC107667333 coding upstream 269803 19520291 ~ 19530863 (+)
LOC122347173 LOC107585103,LOC107748397,LOC107582678,LOC107673556 coding downstream 682 19802686 ~ 19816030 (+)
prkcda LOC107673500,LOC107712078,LOC107721176,LOC107667398,LOC107582675 coding downstream 17833 19819837 ~ 19829702 (+)
ddi2 LOC107712079,LOC107673502,LOC107667352,LOC107721177,LOC107584413,LOC107578835 coding downstream 29135 19831139 ~ 19838046 (+)
si:ch73-15b2.5 LOC107673501,LOC107712080,LOC107584503 coding downstream 36501 19838505 ~ 19842296 (+)
frs3 frs3,LOC107673473,LOC107584505,LOC107712068,LOC107667350,LOC107568202,LOC107721202 coding downstream 48681 19850685 ~ 19862962 (+)
G46640 NA non-coding upstream 1154 19799012 ~ 19799512 (+)
G46633 NA non-coding upstream 10327 19789698 ~ 19790339 (+)
G46632 LOC107673616,LOC107585107,LOC107711037 non-coding upstream 11816 19787935 ~ 19788850 (+)
G46631 NA non-coding upstream 13464 19786974 ~ 19787202 (+)
G46623 NA non-coding upstream 25514 19774706 ~ 19775152 (+)
G46711 NA non-coding downstream 147224 19949228 ~ 19949668 (+)
G46690 NA non-coding downstream 159205 19961209 ~ 19961985 (+)
G46722 LOC107673562,LOC107584441,LOC105017189 non-coding downstream 163255 19965259 ~ 19966466 (+)
G46726 NA non-coding downstream 189667 19991671 ~ 19999698 (+)
G46731 NA non-coding downstream 204160 20006164 ~ 20007343 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other upstream 14369 19784177 ~ 19786297 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other upstream 206658 19566011 ~ 19594008 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other upstream 453037 19262584 ~ 19347629 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 1183708 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 1634424 18156655 ~ 18166242 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 41043 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 64555 19866559 ~ 19873535 (+)
G46742 NA other downstream 285087 20087091 ~ 20095641 (+)
LOC122346811 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494 other downstream 829966 20631970 ~ 20661207 (+)
LOC122347404 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494,LOC107712119 other downstream 918413 20720417 ~ 20749398 (+)

Expression


Co-expression Network