vhl (LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681)


Basic Information

Item Value
gene id vhl
gene name LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19792750 ~ 19794626 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242349.1
TCACGTGATCACGCAATCACAACAAACGACGACGAGATGTACAGATGAGTGTTGACAGTCACGTACGCGTTCCTTTCCCCGATGATTTGGGTCGTAgcgtttgtttttaatcattttaggaGTGAACGTTAACGTTTctagtttgtgttttatttacttgGAGCGTGACTGCTGTTCGTATCTTTGCGTCAGTCTTGTCCGGTCATTGGCGATGCCTCAGGAGTCTCCGGAGGGTCAGCAGGCGCTGCCGCGGCCGCTGGTCCGATCTCTGGTCAGCCGGACACCGGCCTGTGTGGTGTTCTGTAACTGCAGCCCGCGCGTCGTGAAGCCCGTCTGGATCAACTTCCGCGGGGAGCCGCAGCCATACGCGGATATTCAACCGTACACCGGCCGAAGAATGACAACCTATGTGGGACACCCCTGGATGTTTCGGGATGCAGAAACTGATGATCCAATGGTAGTCAACAATAAAGAGATGTATTTGCCAGCCCACCTTGAAAATCGACAAGTCTCAATTGCCAACATCACATTACCTGTGCTGACCTTGCGAGATCGCTGTCTGCAAGTTGTGAGGAGATTGGTGCGCAGAGAAGATATCTCTCAGTTGGAGATCGCCCGCTGCCTACAAGATGACCTTGCTCAGAGACCCAGCATTCATACCGATCTACGACGAATTAGCCAGCGGGTGGAACAGAAGCTGCTGGAGAACGGAGAACAGCAAAACAGatgaaaatatgaacattaGCATGAATGTGAATAAGGGCATATTTACTAAGAAAACCTGTGCACCATCACCAGGAATGGACAgcatagtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagattgttCGACCTCAGATCAGGAGGAATATTTTCTTAAGCAAATGGAACTAGAAAATGCAGTTTGTGTGACTCTGTGGTAGACATTTGcgatattatatttttttgcttacttTTCTCTGTATACTTTTACTCTTGTTTCAGATTTATACTTGGAaaaatctttgtaaaaaaaaaaaagttattaaatgtttttaattatg

Function

NR:

description
von Hippel-Lindau disease tumor suppressor

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03871 VHL; von Hippel-Lindau disease tumor supressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242349.1 True 1047 mRNA 0.45 3 19792750 19794626

Neighbor

gene id symbol gene type direction distance location
tatdn2 LOC107673616,LOC107585107,LOC107711037 coding downstream 1300 19786424 ~ 19791450 (-)
ccdc174 ccdc174,LOC107673461,LOC107711012,LOC107585200,LOC107667317,LOC107582683,LOC107748410 coding downstream 8144 19780907 ~ 19784606 (-)
si:dkey-28n18.9 LOC107711013,LOC107585201,LOC107673478,LOC107582684,LOC107748409,LOC107667326 coding downstream 11995 19776312 ~ 19780755 (-)
ttll3 ttll3,LOC107711014,LOC107673469,LOC107585175,LOC107748395,LOC107667364,LOC107582793 coding downstream 45299 19740237 ~ 19747451 (-)
col7a1 col7a1 coding downstream 56253 19677759 ~ 19736497 (-)
crbn crbn,LOC107711034,LOC107748399 coding upstream 477 19795103 ~ 19800569 (-)
ppil1 ppil1,LOC107673584,LOC107667353 coding upstream 79347 19873973 ~ 19875768 (-)
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding upstream 111225 19905851 ~ 19908068 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding upstream 116368 19910994 ~ 19913842 (-)
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding upstream 123427 19918053 ~ 19921278 (-)
G46658 NA non-coding downstream 422 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 185694 19606362 ~ 19607056 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 395020 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 549939 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 641056 19149746 ~ 19151694 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 6617 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 39444 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 82686 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 173620 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 260240 20054866 ~ 20115259 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 236808 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 643019 19115061 ~ 19149731 (-)
G46478 NA other downstream 736619 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 1075262 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 1085154 18706623 ~ 18707596 (-)
tomm6 NA other upstream 46853 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 48418 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 105046 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 204006 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 301398 20096024 ~ 20102459 (-)

Expression


Co-expression Network