arpc4 (arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159)


Basic Information

Item Value
gene id arpc4
gene name arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19961196 ~ 19964821 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242356.1
TTATCCAGTCGTCGCCCCCTACTCGGTGAAAAGTTGGTATCTTCCGATGAATGGCGTTACTCGCGGAAGTCGCCCGGTGTTTGTAGCACTTCCGTCTTCTGCTCCAGCGGGTACATAGAAATGACAGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTTGAAAACTTCTCCTCACAGGTGGTTGAAAGACACAACAAACCTGAGGTTGAAGTCCGGAGCAGTAAGGAGCTGTTGCTTCAACCTGTTGTGATCAGTAGGAATGATAAAGAGAAGGTTTTAATAGAAGGTTCCATCAACTCTGTGCGAGTTAGCATTGCTGTCAAACAGGCCGATGAGATTGAAAAGATCCTGTGTCACAAGTTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATCCTGCGAAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCACAAGTTAGTGGACTTTGTCATCCATTTTATGGAGGAGATCGATAAGGAAATCAGTGAAATGAAACTGTCTGTCAATGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAATTTTTAGGAAATTTTCAGCACACCTTCTGCAATACCTGTGTCACCTTGGtcaccgaaaaaaaaaaacgatggaGAGCTGTGGGGCCACTGAGGAAGTAGTTAAGGTGCGATTTGATTCCTGGACCACCAGCGAAGGTGGACCAGCTGGATCCAGAGGGTGCCGTCAGTCACCGGAATGAATTCAGAGTATTGCAGTTTTGTCACTTGAGAGCAAAGTAATGGTTTTCACAGACAGGCACGGTACTTCTTTTGTCGTCTGTTTTATTCTTTGACTTCTTTGCCtctatatctttttttttttttttttttttttttttacttttgctaATGGCCTAATTTTTCTGCAGTTCCATTTGTGTATTCTGTCTCTCTTCATCTTATCCCAAATCCTGTTATTATTTAGTAGTAGTAAAGCACTCACAACGTTGCAATATTCTGAATATGCCTCAGCTTTCCCTCatgcttatgaatattaatgagtaTGTTCTGTACATATTAAAAAGGATAGACTCATTTTACCTCTGCCTTTCTAACAAACCTTAAAATCAGGGTGGGTCTATATAAATGAAACCTCATTGATACTCATGAGCACAGAGGAAAAATGTTCAGTGTCCAATAATTTAAACGGTTTGTTTTGtcaatgttttttataaatatgtatactgtgttcaaatgatcatttttcatgttgagttttgatattaaaaaaaacctcacgCTGGTGCACATGGATCTTAAAAATCATATCAGTCATGGCAAAATAATGATGACAATGCTAAATAAATCCCTTTAttgcttt

Function

symbol description
arpc4 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

NR:

description
Actin-related protein 2/3 complex subunit 4

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242356.1 True 1419 mRNA 0.40 6 19961196 19964821

Neighbor

gene id symbol gene type direction distance location
LOC122347206 wu:fd14a01,LOC107575389,LOC108443910,LOC108254796,LOC107571573,LOC107705004 coding downstream 1539 19949312 ~ 19959657 (-)
p4htmb p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding downstream 26771 19928355 ~ 19934425 (-)
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding downstream 39918 19918053 ~ 19921278 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding downstream 47354 19910994 ~ 19913842 (-)
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding downstream 53128 19905851 ~ 19908068 (-)
LOC122347402 LOC107673562,LOC107712070,LOC107584441,LOC105017189 coding upstream 582 19965403 ~ 19966424 (-)
eefsec eefsec,LOC107584423,LOC107667374,LOC107568193 coding upstream 24098 19988919 ~ 19994672 (-)
rft1 rft1,LOC107584424,LOC107673548,LOC107721169,LOC107712099,LOC107568194 coding upstream 36279 20001100 ~ 20004685 (-)
sirt4 sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314 coding upstream 41233 20006054 ~ 20009354 (-)
zgc:172271 zgc:172271,LOC107568196,LOC107721198,LOC107667401,LOC108440373,LOC105889207 coding upstream 44693 20009514 ~ 20016235 (-)
LOC122347207 NA non-coding downstream 80608 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 123149 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 158930 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 168868 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 354140 19606362 ~ 19607056 (-)
G46803 NA non-coding upstream 3425 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 90045 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 163127 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 184726 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 208717 20173538 ~ 20174291 (-)
LOC122347177 LOC107584418 other downstream 4466 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 113764 19843044 ~ 19847432 (-)
tomm6 NA other downstream 118202 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 405254 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 811465 19115061 ~ 19149731 (-)
mustn1a mustn1a other upstream 33811 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 131203 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 196619 20161440 ~ 20166279 (-)
G46926 NA other upstream 564358 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1383798 21348619 ~ 21355381 (-)

Expression


Co-expression Network