G26609


Basic Information

Item Value
gene id G26609
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2670313 ~ 2671760 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30008
CAGGCGCCTCGGGAGACTCCGTGTGAAATGTGACCACTGCTCGGTGGATTCTAGGATTCCCTTCTAACATACTCGTCACCAGCGCGTGGTACCACTGGATATCCCTCTTCAGATGCTGCTCCCTGGAGGTGTTGGACTGCAGGAGCATGTTTAGGAAGTTGGTGGCGTGCGCCATGGTGTCGAGGACGCCGTGGAGGGAGGAGTGCGAGGCGGCGTGAACTCCACCGCGGAGACTGCTCAGCTCATACCGCCGTGAACAGCTGACATGCTCCAGGGTGGATGAGTCCCCCGTGTGCAGGAAAGCGGTGACCACCCGCGGCAGATCCTCCTCGAGCTTATGCGCCACCGCCGTTCGCTCGGTGCTGGAGATAGTCGGCTGCTGGTGCATCGTCTCCCCGGTGCTGTAAATTGGATATTTAGCCTTGATTTCAGGATCTTTGTCGTTCTCAGACCATTCCACGTAGCCATAATTTGATCCCTTCGCAATTCCCATTAGCAGAAGAAGGCAGAGCAGGAATGCATCCATACCTCGACGCCAACAAGGACCGTAAACATTCTCCATTGATATTCACTTCATAAGTGCGCCCATTCCTCAGCTTAACGTAAACAGACGCGCATTCTCAAAAGTTACTCAACTCTAATGCTTTAATCAGACAAATACACACACCGACCAGTCCACCCACATCTGTAGATCAACTGGCATTCTGTGGATCTAACGCGTCAAGCCTCATGCGTGTAGATTTAAGAACCGACTGTGGCAAATATCCACAGCATCGTTTCTGCCGTGGGTTACTGTAGCGTTCACTACTCCCATCAGTAACGAATGCTCGCTCGGAGCTGGCGGGGGGCTGATTGTTTCCAAAAGCCTGTTTCCCTCGTTACTGTTTTGGAGACTTGTGAATGGCCATCGCTCCTGCCAATCCTGTGCACTTGGGTGGAGTGAAGAGAGACAAGCGACTTCACTTTTCTTCTCTAATGACGTGTTTACTGGCTCGAGGGCGGGACAACCTGTCACTCACATCACAACAATAGCAAACCACAACTATCCTATCAATTCTTGATGGACAAAATCAAGGCCTACATTTTTTTCTTGTTCAAGAAAGCCCTTTCACTCGAATAAATGTCACAAACTGAAAAGGCTACCGCAACTTCCATTTTATGCCGACTTTAAACCTTTTTTGAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30008 True 1185 lncRNA 0.44 2 2670313 2671760

Neighbor

gene id symbol gene type direction distance location
CI01000004_02664483_02667653 PRTFDC1 coding downstream 2660 2664483 ~ 2667653 (-)
CI01000004_02638015_02638848 NA coding downstream 31368 2629744 ~ 2639335 (-)
CI01000004_02608555_02621378 NA coding downstream 48935 2608163 ~ 2621378 (-)
CI01000004_02571511_02598869 ARHGAP21B coding downstream 70231 2571311 ~ 2600082 (-)
CI01000004_02458156_02458869 NA coding downstream 211351 2457795 ~ 2458962 (-)
CI01000004_02777722_02810321 CDC73.S, CDC73 coding upstream 105962 2777722 ~ 2810321 (-)
CI01000004_02812936_02825192 TROVE2 coding upstream 141093 2812853 ~ 2825192 (-)
CI01000004_02834634_02863535 GREB1L coding upstream 160984 2832744 ~ 2863598 (-)
CI01000004_02953160_02955378 NA coding upstream 281386 2953146 ~ 2955490 (-)
CI01000004_03070803_03073454 LHX8, LHX8A coding upstream 398856 3070616 ~ 3073481 (-)
G26568 NA non-coding downstream 185150 2484232 ~ 2485163 (-)
G26544 NA non-coding downstream 213597 2456411 ~ 2456716 (-)
G26541 NA non-coding downstream 218228 2451869 ~ 2452085 (-)
G26538 NA non-coding downstream 224501 2445605 ~ 2445812 (-)
G26635 NA non-coding upstream 59163 2730923 ~ 2731238 (-)
G26636 NA non-coding upstream 63835 2735595 ~ 2735829 (-)
G26656 NA non-coding upstream 220068 2891828 ~ 2892300 (-)
G26658 NA non-coding upstream 234527 2906287 ~ 2908306 (-)
G26673 NA non-coding upstream 266244 2938004 ~ 2938481 (-)
CI01000004_01773383_01774888 INSL5B other downstream 895372 1772928 ~ 1774942 (-)
G26788 NA other upstream 602673 3267683 ~ 3275721 (-)
G27746 NA other upstream 2506467 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2948623 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3863067 6538904 ~ 6541252 (-)
G29388 NA other upstream 3959533 6631293 ~ 6631907 (-)

Expression


Co-expression Network