ackr3b (ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319)


Basic Information

Item Value
gene id ackr3b
gene name ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7051184 ~ 7055846 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242416.1
ATCGGCCTCGGGAGGCGTTACTCGCGGCGCTATATCAGCAAGTGCTGTCGGAGCGCAGAGGAACAATCACGCCATCCTCTCGCACGGATAACCACGAGACGTTGACATCTTCTCCAGGCGTCAGAATCTCGCTACCGAAGTCCAGGAGAACCAGAACACACCGCAAGTATTgtCACTGCCATTGTGTCCAAAAAGCGGTAATAACAAAGACGTGCCAAGATGAGTGTGAACGTGAACGACTTTAATGACATTCTGGACGTACTGGGTGATCTGAACTTCTCAACCCTTGACGATAATGTCTCCCATGTGGAAGTGTGTCACAGCACCTTCAGCCAGAGGGCTCTGCTCTATGCCCTCTCTATTCTCTACatcttcctcttcatcatcgGCCTCGCCGCCAACGCTCTGGTGGTGTGGGTGAACGTGCGAACTGAAAGGAAACGATACGAAACTCACCTGTATATCCTCAACCTTGCCATCGCTGACCTCTGCGTAGTGGCCACTCTGCCGGTCTCCATTAGTTCTCTGCTTCAGCTCGGCCACTGGCCTTTCGGTGATGCCATGTGCAAAATTACACACCTGATCTTCAGTGTCAACCTCTTCAGCAGTATCTTTTTCCTTACATGTATGAGTGTGGACCGCTACCTGTCTGTGAAACTTTTCGGAGACGGTCCCAGTCAGAGGAAGAGAAGGACCAGGCAGCTAATCTGTGTTGGCGTTTGGCTGCTGGCGTTCTTTGCCGCCCTCCCCGAAACATACTTCCTCCAGGCGGAGAAATCCAGCCATTCGGACAGCATCATATGTAAACCAGTGTACCCGGTGGACAGTATTAAGGAGTGGACAGTTGGAATCCAAATGAGCTTCTTCATGCTCGGCTTTGCCATCCCCTTCCCTATCATAGCTGTGTTCTACATCCTCTTGGCCGGTACTATCCAACCCTCAGCTGACCAGGAACGCCGTATCAGCCGTCGTCTCATCTTCACCTACATTGTGGTCTTCCTAGTGTGTTGGCTTCCCTACCATGGAGCTCTGCTGCTTGACACTCTAACCTTCCTCAACGTGCTTCCCTTCAACTGCACACTGGAGAACGCTCTCTATGCAGCGCTGAATCTCACCCAGTGGTTCTCTCTCCTTCATTGCTGCGTGAACCCCATCATCTACAACTTCATCAACAAGAACTACCGCTACGACCTGATGAAAGCTTTCATCTTCAAGTACTCTACCAAAACTGGCCTCGCTAGGCTTATCGATGCCTCACGTGTGTCTGAGACAGAATACTCGGCTGTGGAGAACCAGGGACCATTATGAACATTCTGTGGCGCCGCCGATCAACACCAAACTTGTAATCTCGGAGACAAACAGGGAACAGTCTTGTAAATCTCTCTGGACGTCTTGCTCTTGAGGCTTTACCAAATTAAATGCTTGTAAAATAGTGAAACAACTTTGTATACGTACAGTTTGGTTACCTTTATAAACAGATGAATGTTTATGCCTTTTGTACAATTTTATGACAGTTGTAGATGTATTGAGAAAGCACTTGTAATGATTTGATTTGTAAGCGCATGTAAGCGTAGTAACTCTAGAAATTGGTGGAAAAGGCTCCGTTCCGGTCCTGGAGCCACAGAGAGACTCGTATAACCCTTTCTCCGCTTATCTGTGGCTTTCCTACATCTGCTGGAAAGACTCCAACATGCTTAAACTATAAgtcatatttacatacacattaACGTACAGTTATGTTACGTCTGGTCAAATGGAGGGGTATATTGAAAACAACTGGAAACAACTGGAAAGTGTGGAGAGAAACAAGTCCAAATCAAGATTAGATATAGCTATTGTAAATTGATGTCATGCTTCATGCTATGCTtgtgaaaaatgatttttttttgatcagtTGTACCTTTCTAGAACAATGCTAGCagcatttgtaaatgttttgtaaataaaattatatttatatactctGTGTACATGCTACGTGTTTTGAAGTATTGTCTGacatataaaaatgtgccaTTAAAAGATGTATCAATCTTC

Function

symbol description
ackr3b Enables chemokine binding activity. Acts upstream of or within several processes, including blood vessel morphogenesis; nervous system development; and posterior lateral line neuromast primordium migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including anterior neural keel; hindbrain neural keel; immature eye; nervous system; and neural rod. Orthologous to human ACKR3 (atypical chemokine receptor 3).

NR:

description
PREDICTED: atypical chemokine receptor 3

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0001525 angiogenesis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0001570 vasculogenesis biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008354 germ cell migration biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015026 coreceptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function

KEGG:

id description
K04304 CXCR7, ACKR3, RDC1; C-X-C chemokine receptor type 7 (atypical chemokine receptor 3)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242416.1 True 2037 mRNA 0.46 2 7051184 7055846

Neighbor

gene id symbol gene type direction distance location
mlpha mlpha,mlph,LOC107748571,LOC107586370,LOC107688909,LOC107596317,LOC107677617 coding downstream 31269 7010883 ~ 7019915 (-)
lrrfip1b lrrfip1b,LOC107688829,LOC107677622,LOC107596315,LOC107738309,LOC107748528,LOC107586315 coding downstream 40689 6983245 ~ 7010495 (-)
st6gal2b LOC107748529,LOC107688830,LOC107559923,LOC107738307,LOC107596313,LOC107677626 coding downstream 79571 6956132 ~ 6971613 (-)
fhl2b fhl2b,LOC107688912,LOC107559916,LOC107596312,LOC105896541,LOC108437838 coding downstream 177324 6867944 ~ 6873860 (-)
tgfbrap1 tgfbrap1,LOC107748533,LOC107688833,LOC107738304,LOC107596311,LOC107660108,LOC107559914 coding downstream 184122 6854340 ~ 6867062 (-)
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding upstream 190410 7246256 ~ 7248116 (-)
slc19a2 slc19a2,LOC107586324 coding upstream 199018 7254864 ~ 7260771 (-)
psmb3 psmb3,LOC107688824,LOC102792592 coding upstream 213425 7269271 ~ 7272477 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding upstream 277177 7333023 ~ 7337888 (-)
col18a1b LOC107709584,LOC107586328,LOC107688819 coding upstream 300502 7356348 ~ 7382805 (-)
G43251 NA non-coding downstream 228163 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 567791 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 1027674 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1295720 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1303790 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 373932 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 405345 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 742278 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 800619 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 993551 8049397 ~ 8050678 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 23757 7001115 ~ 7027427 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 223456 6804058 ~ 6827728 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other downstream 526234 6041876 ~ 6524950 (-)
G43180 nck2b,LOC107688832,LOC107748532,LOC107660111,LOC107738306 other downstream 750047 6273323 ~ 6301137 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other downstream 1084580 5958793 ~ 5966604 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other upstream 52316 7108162 ~ 7245179 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other upstream 218994 7274840 ~ 7314774 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other upstream 261101 7316947 ~ 7329565 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 524049 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 681244 7737090 ~ 7770451 (-)

Expression


Co-expression Network