slc35d1a (slc35d1a,LOC107724140,LOC107551012,LOC107684099,LOC107758361,LOC107594604,LOC107692433,LOC108441641)


Basic Information

Item Value
gene id slc35d1a
gene name slc35d1a,LOC107724140,LOC107551012,LOC107684099,LOC107758361,LOC107594604,LOC107692433,LOC108441641
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16571144 ~ 16578063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242455.1
TGTAAACATGGCGGAAGTTCAGAGGCGTCAACGTGGGGAGGAAGAAAGGCGCTCCGTTCAGAATGAAGCAATGTGAGCCAAGGaatgaagcggctgggatggcGGACCAAACGTTAACGGTACTCTTCAAACTTTTAGCTGCGGCCTTTTATGGAATCAGCTCTTTCCTTATAGTTGTAGTGAACAAGAGCGTCCTGACAAATTACAGGTTCCCCTCTTCGATATGTGTTGGCATTGGTCAGATGCTGGCAACAGTAGTTGTGTTACGGGTGGGAAAGGCCCTCCGGGTGATCACCTTTCCAGAATTTGATGGTAGCATACCTAGGAAGACATTTCCGCTACCTCTTCTGTATGTTGGAAATCAAATAACAGGACTCTTTGGGACAAAAAGACTTAACCTGCCAATGTTTACAGTGTTGAGGAGGTTTTCTATCCTCTTTACAATGCTGGCCGAGGGTTTCTTGTTAAAGAAGAAATTCTCCCGGCCAGTTCAGCTGACAGTATTTACTATGATTATAGGGGCCTTTGTAGCTGCAAGCGCTGACTTGGCTTTTGACCTGCAAGGgtatgtgttcattttaatgaacGATGTCTTAACTGCTGCCAATGgagcttttgtgaaacagaaactTGACTCTAAGGAGCTGGGAAAGTATGGCCTGCTCTATTACAATGCTTTATTTATGATTCTTCCAACACTGCTATTAGCGCATGTCACAGGAGATATGGATAagGCTTTTGAATACGAAGGCTGGTCAGATGTGCTTTTTATAGGTCAATTCATTCTCTCTTGTATAATGGGGTTTGTTTTAATGTACTCCACTGTACTTTGCACTCAGTATAACTCTGCGCTAACTACTACCATCGTTGGCTGCCTAAAaAATATATTAGTGACGTATATTGGAATGGTGTTTGGAGGAGATTACATTTTCTCATGGACTAACTTCATTGGTCTGAACATCAGTATTGCTGGCAGTCTGGTGTATTCCTACATTACCTTCACAGAGGAACAGACCACCAAACAGAGCGAGAATGCCAACAAGCTAGAGGTCAAAGGGAAAGTGTCCGTATGACCGGTGCTTTGATGGACGTTCGTAATGCGCAAGGCTGTATTTATGAGTTCTTGTATTTCTTGCAAGAGTAAGAAGTCACtcctaagttttttttttttattgttattttatgaagattttatgatgattattattatatgaaggTACAGCAGATGTTGGAGGGGCATCGTCTCAAATGAAAGATTTGGTCACGTTTCAAACATACTGGAACGTCATTATTCCAGAGTAAATATTTGCTTGTTAATTTTCACTTCTGTTAAGAAGTGGTGCCTGTGTTACAAACCGATGGTTGGTGTCCTGCAATGTTGGATGCTTGCCACAAACTGGGAATGAGGACTGTCATTAGTGTTGAAACGCCTGCTTTATCGTCTGTTGAATAGTACTTTTAAAGATGGGTTTTAGTCAGTgaggctatttatttttatgagagcTGTTTTTTATTGCCAAGATTGTGAATTGGGTTTTATTGTTGGGAAAGGTTTATTCTAGCTGCAAAAAGGAAGTTACGTACATCGTTTAAGTAGTCTTTTGACAGTTCTGGTACCCTGTTACACAACTTGAGTTTGACAGAAATGCTCCTTCAAACTCTGAATGCTAAATGGAAAGGGAGTGTTCGAGTGTAAAATAAGGTACTTGTTAAGTAggtgttttatttgaatcttTTGATAACAAGCTTTAAAGAACGATATTTTGTGTTAAGCGTTCTCAGTGTTACACAGTGTTCAACTGGACTGATTATTATAactgctttttgtatttttttgtatttgggAATGGGATGCAGTAACTGTTTTTTTACTGATGGAATCACGGTAAAGGAAAAAATAGTGTAATTGCACTTTAACAGTTTACAGACTTTCTCATTCGTCAGTGATTTAAAATCGATGTTagtttttgcaaaaacattgtaatacaatatacacaaacatttcagtATTTTGACTTGTCTCGTTTAAAGTTGCCGTGTTTGGGTGAATCGGAAAGAAAGGAGAGAGTCTGCatttatgtctgtgttttttacaaatgcaaaatgctagttttcttgttttatacTTCTTTTATAATCTGCGGCTACTGAATGAATGTCTGTTTTCATTCATGCATGCCACTGATTGGAACATTGCTTAGAGATTCAAATTTTACGGATGATTTccatttgtgttcatttttcaCTGATGACATGTTGCTGTAGAAGTATTTTATGTATTCAACTTGTgcttttaagtatatttttcttttcacgTTTTTTAGTGAGTTCAGTTTAAGTGTTTCTTTATCAAATTCATATCTGCAAATTCTCAGTCATTGTGTCAGTGAGAAACGGAAGtgtgtaacatttaaaatacctCAGCTCGAAGAATCTGTATTTCATTTTCTGAtgttaaccaaaataaaaatctttttcatttttaa
>XM_043242456.1
ATGGCGGAAGTTCAGAGGCGTCAACGTGGGGAGGAAGAAAGGCGCTCCGTTCAGAATGAAGCAATGTGAGCCAAGGaatgaagcggctgggatggcGGACCAAACGTTAACGGTTCCCCTCTTCGATATGTGTTGGCATTGGTCAGATGCTGGCAACAGTAGTTGTGTTACGGGTGGGAAAGGCCCTCCGGGTGATCACCTTTCCAGAATTTGATGGTAGCATACCTAGGAAGACATTTCCGCTACCTCTTCTGTATGTTGGAAATCAAATAACAGGACTCTTTGGGACAAAAAGACTTAACCTGCCAATGTTTACAGTGTTGAGGAGGTTTTCTATCCTCTTTACAATGCTGGCCGAGGGTTTCTTGTTAAAGAAGAAATTCTCCCGGCCAGTTCAGCTGACAGTATTTACTATGATTATAGGGGCCTTTGTAGCTGCAAGCGCTGACTTGGCTTTTGACCTGCAAGGgtatgtgttcattttaatgaacGATGTCTTAACTGCTGCCAATGgagcttttgtgaaacagaaactTGACTCTAAGGAGCTGGGAAAGTATGGCCTGCTCTATTACAATGCTTTATTTATGATTCTTCCAACACTGCTATTAGCGCATGTCACAGGAGATATGGATAagGCTTTTGAATACGAAGGCTGGTCAGATGTGCTTTTTATAGGTCAATTCATTCTCTCTTGTATAATGGGGTTTGTTTTAATGTACTCCACTGTACTTTGCACTCAGTATAACTCTGCGCTAACTACTACCATCGTTGGCTGCCTAAAaAATATATTAGTGACGTATATTGGAATGGTGTTTGGAGGAGATTACATTTTCTCATGGACTAACTTCATTGGTCTGAACATCAGTATTGCTGGCAGTCTGGTGTATTCCTACATTACCTTCACAGAGGAACAGACCACCAAACAGAGCGAGAATGCCAACAAGCTAGAGGTCAAAGGGAAAGTGTCCGTATGACCGGTGCTTTGATGGACGTTCGTAATGCGCAAGGCTGTATTTATGAGTTCTTGTATTTCTTGCAAGAGTAAGAAGTCACtcctaagttttttttttttattgttattttatgaagattttatgatgattattattatatgaaggTACAGCAGATGTTGGAGGGGCATCGTCTCAAATGAAAGATTTGGTCACGTTTCAAACATACTGGAACGTCATTATTCCAGAGTAAATATTTGCTTGTTAATTTTCACTTCTGTTAAGAAGTGGTGCCTGTGTTACAAACCGATGGTTGGTGTCCTGCAATGTTGGATGCTTGCCACAAACTGGGAATGAGGACTGTCATTAGTGTTGAAACGCCTGCTTTATCGTCTGTTGAATAGTACTTTTAAAGATGGGTTTTAGTCAGTgaggctatttatttttatgagagcTGTTTTTTATTGCCAAGATTGTGAATTGGGTTTTATTGTTGGGAAAGGTTTATTCTAGCTGCAAAAAGGAAGTTACGTACATCGTTTAAGTAGTCTTTTGACAGTTCTGGTACCCTGTTACACAACTTGAGTTTGACAGAAATGCTCCTTCAAACTCTGAATGCTAAATGGAAAGGGAGTGTTCGAGTGTAAAATAAGGTACTTGTTAAGTAggtgttttatttgaatcttTTGATAACAAGCTTTAAAGAACGATATTTTGTGTTAAGCGTTCTCAGTGTTACACAGTGTTCAACTGGACTGATTATTATAactgctttttgtatttttttgtatttgggAATGGGATGCAGTAACTGTTTTTTTACTGATGGAATCACGGTAAAGGAAAAAATAGTGTAATTGCACTTTAACAGTTTACAGACTTTCTCATTCGTCAGTGATTTAAAATCGATGTTagtttttgcaaaaacattgtaatacaatatacacaaacatttcagtATTTTGACTTGTCTCGTTTAAAGTTGCCGTGTTTGGGTGAATCGGAAAGAAAGGAGAGAGTCTGCatttatgtctgtgttttttacaaatgcaaaatgctagttttcttgttttatacTTCTTTTATAATCTGCGGCTACTGAATGAATGTCTGTTTTCATTCATGCATGCCACTGATTGGAACATTGCTTAGAGATTCAAATTTTACGGATGATTTccatttgtgttcatttttcaCTGATGACATGTTGCTGTAGAAGTATTTTATGTATTCAACTTGTgcttttaagtatatttttcttttcacgTTTTTTAGTGAGTTCAGTTTAAGTGTTTCTTTATCAAATTCATATCTGCAAATTCTCAGTCATTGTGTCAGTGAGAAACGGAAGtgtgtaacatttaaaatacctCAGCTCGAAGAATCTGTATTTCATTTTCTGAtgttaaccaaaataaaaatctttttcatttttaa

Function

symbol description
slc35d1a Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in Kupffer's vesicle; forerunner cell group; otic vesicle; and pharyngeal arch. Human ortholog(s) of this gene implicated in schneckenbecken dysplasia. Orthologous to human SLC35D1 (solute carrier family 35 member D1).

NR:

description
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15281 SLC35D; solute carrier family 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242455.1 True 2486 mRNA 0.38 12 16571144 16578063
XM_043242456.1 False 2390 mRNA 0.38 12 16571144 16578056

Neighbor

gene id symbol gene type direction distance location
mier1a mier1,LOC107758364,LOC107724131,LOC107684256,LOC107551013,LOC107692413 coding downstream 683 16563950 ~ 16570461 (-)
dmrt2b dmrt2b,LOC107684342,LOC107551024,LOC107692445 coding downstream 182730 16384336 ~ 16388414 (-)
LOC122347428 tmem125,LOC107725195,LOC107684333,LOC107551025,LOC107594640 coding downstream 220875 16340305 ~ 16350269 (-)
tie1 tie1,LOC107731644,LOC107684058,LOC107725190 coding downstream 259491 16299579 ~ 16311653 (-)
mpl mpl,LOC107725197,LOC107594610,LOC107551019,LOC107725192 coding downstream 272219 16292195 ~ 16298925 (-)
serbp1a LOC107594603,LOC107692416,LOC107758366,LOC107724138 coding upstream 25232 16603295 ~ 16609663 (-)
hsd17b7 hsd17b7,LOC107551038,LOC107758362,LOC107692446,LOC107724130 coding upstream 32217 16610280 ~ 16617199 (-)
ddr2a ddr2,ddr2a,LOC107724144,LOC107551036,LOC107594601 coding upstream 40509 16618572 ~ 16647615 (-)
uap1 uap1,LOC107724142,LOC107551035,LOC107692418 coding upstream 71402 16649465 ~ 16659733 (-)
LOC122346973 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding upstream 98222 16676285 ~ 16683433 (-)
G45770 NA non-coding downstream 248339 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 300036 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 301752 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 303602 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 452558 15902216 ~ 16118586 (-)
G45897 NA non-coding upstream 609393 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 936575 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1229558 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1244473 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 1462301 18040364 ~ 18044630 (-)
fam183a fam183a,LOC107551015 other downstream 207124 16361167 ~ 16364020 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 510678 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 511377 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 806037 15756309 ~ 15765107 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 965674 15603910 ~ 15605470 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 238577 16816640 ~ 16830261 (-)
G45895 NA other upstream 608626 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 657727 17235790 ~ 17246386 (-)
G45910 NA other upstream 729752 17307815 ~ 17308478 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other upstream 804264 17382327 ~ 17414139 (-)

Expression


Co-expression Network