LOC122347276 (sumf1,LOC107673603,LOC107585117,LOC107667304)


Basic Information

Item Value
gene id LOC122347276
gene name sumf1,LOC107673603,LOC107585117,LOC107667304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15683566 ~ 15691034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242473.1
ATGGCAACCGCTCCACCACCTgcaaaggtcagaggtcatgacAAGTCTTTCTCTCACCTCTCTCCGGCGAAGTTGGAGCAAAAGCGTCCGCGGTATTTTCCCAGACGTTTCGTCCTCAGTTTGAGAAAGTTATTAACCCGACTCCTCATAGAGTCCAGCAGCGGTCCATCGCCCCGATGTTCGTCTCTTTTCGGCTCGCCGAGTGACTCTGTCAACAGAGCGCTGCAGCTACGCAGGTCAGCTGACTGGTCACGTGACTCTTTCCGGACGTGCTGTTCCCCGTGTTCAGACCTGACGCTGGACATGGCCTTAACATTGAAcgtttctgtcattttatttctctgcattTTATCAGTGCGTAGTGCTATAGGCGACATCGTTCTCGAACAGCAGTCGTCGGAGTCCCGAAGCACGGATTGCGGTTGTCAGGGTCTGAAAAGAGATGTTACTGTTGATGTAAGTGATGAGAACAAACTGGAACATCACGAAGATGCAAATATATACTCCAGAACAGCAAACGAAAGTCCACACGAGACAGAGTATGATATACGCAGTAAGCTGGTGCTGCTGCAGGGAGGTTGGTTTATGATGGGAACAGATGACCCAGGAATACCACCGGATGGAGAAGGGCCGCAGAGGAGAGTGAGATTGGACCCTTTTTACATGGAAGACCATGAAGTCACAAACCAGCAGTTCCAACACTTCACCAACCAGACAGGATACACCACAGAGGCTGAACGTTTTGGAGACTCCTTTGTTTTCGAGGGACTGCTGAGTGACGATGTGAAGGGCACTCTGTCACAAGCGGTGGCTGCTGCTCCTTGGTGGTCGCCAGTGAAAGGTGCAGACTGGAGACACCCAGAAGGACCAGATTCAACCATAGAgcaaagGATGAATCACCCTGTTTTGCATGTGTCATGGAGTGATGCACAGGCGTACTGTCACTGGGCCAGGCGCAGACTTCCTACTGAAGCTGAGTGGGAGATGGCCTGTAGAGGAGGACTGCAAGATAGGCTGTACCCATGGGGAAATAAACTACTGCCCAGAGGGCAGCACTATGCTAACCTTTGGCAAGGTGATTTTCCTAACCGCAACACAGCAGAGGACGGCTTTGCTAACACATCACCGgtgatgtcatttcctgcaAATGGCTTTGGGCTGTATGATATGGTGGGAAATGCATGGGAGTGGACGGCAGACTGGTGGAATGTGCATCACTCTACAGAAGCCAAGCAGAACCCTAAAGGACCAGAAACAGGGACAGACAGAGTCAAGAAAGGAGGCTCCTACATGTGTCACAAGtcTTACTGCTACAGATACAGGTGTGCAGCCCGTAGTCAAAATACTCCAGACAGTTCTGCCTCTAATCTGGGCTTCCGCTGCGCTGCTGACGCTGATCCATGACCTCAAACATGAGGTCTATCACTGTCATCACATGAAATCAAGAatgattgtgtgtttttatgtaaataaatccatttgtaaaa

Function

symbol description
sumf1 Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in mucosulfatidosis. Orthologous to human SUMF1 (sulfatase modifying factor 1).

NR:

description
PREDICTED: sulfatase-modifying factor 1-like isoform X1

GO: NA

KEGG:

id description
K13444 SUMF1, FGE; formylglycine-generating enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242473.1 True 1487 mRNA 0.50 11 15683566 15691034

Neighbor

gene id symbol gene type direction distance location
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding upstream 26378 15646020 ~ 15657188 (+)
LOC122346435 wdr78,LOC107590676 coding upstream 343430 15334030 ~ 15340136 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 498900 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 528944 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 675497 14964912 ~ 15008069 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 4592 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 55040 15746074 ~ 15753735 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 122888 15813922 ~ 15941551 (+)
LOC122347284 mast4,LOC107740425,LOC107684348,LOC108437187,LOC107730326,LOC107681051 coding downstream 383426 16074460 ~ 16104862 (+)
LOC122347577 tmem69,LOC107731626,LOC107684288,LOC107594642,LOC107725194,LOC107692399,LOC107579605 coding downstream 391302 16082336 ~ 16083207 (+)
G45459 LOC107711016,LOC107673510,LOC107748416 non-coding upstream 38440 15644034 ~ 15645126 (+)
G45470 uroc1 non-coding upstream 45042 15637946 ~ 15638524 (+)
G45456 NA non-coding upstream 100160 15580262 ~ 15583406 (+)
G45447 NA non-coding upstream 106531 15510740 ~ 15577035 (+)
G45421 NA non-coding upstream 195674 15486374 ~ 15487892 (+)
LOC122346530 NA non-coding downstream 113254 15804288 ~ 15805565 (+)
G45635 NA non-coding downstream 197723 15888757 ~ 16117279 (+)
G45643 NA non-coding downstream 461148 16152182 ~ 16155761 (+)
G45684 NA non-coding downstream 604497 16295531 ~ 16298954 (+)
G45794 mier1,LOC107551013,LOC107758364,LOC107724131 non-coding downstream 872920 16563954 ~ 16565233 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 116898 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 224180 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 439286 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1703280 13972173 ~ 13980286 (+)
G44887 NA other upstream 2273654 13394229 ~ 13409912 (+)
G45894 NA other downstream 1495674 17186708 ~ 17187308 (+)
G46022 NA other downstream 2304157 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2465621 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 2886144 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 3571550 19262584 ~ 19347629 (+)

Expression


Co-expression Network