sumf1 (sumf1,LOC107673603,LOC107585117)


Basic Information

Item Value
gene id sumf1
gene name sumf1,LOC107673603,LOC107585117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19560562 ~ 19568042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242483.1
ATGGCAACCGCTCCACCACCTgcaaaggtcagaggtcatgacAAGCTGCAGCTACGCAGGTCAGCTGACTGGTCACGTGACTCTTTCCGGACGTGCTGTTCCCCGTGTTCAGACCTGACGCTGGACATGGCCTTAACATTGAAcgtttctgtcattttatttctctgcattTTATCAGTGCGTAGTGCTATAGGCGACATCGTTCTCGAACAGCAGTCGTCAGAGTCCCGAAGCACGGATTGCGGTTGTCAGGGTCTGAAAAGAGATGTTACTGTTGATGTAAGTGATGAGAACAAACTGGAACATCACGAAGATGCAAATATATACTCCAGAACAGCAAACGAAAGTCCACACGAGACAGAGTATGATATACGCAGTAAGCTGGTGCTGCTGCAGGGAGGTTGGTTTATGATGGGAACAGATGACCCAGGAATACCACCGGATGGAGAAGGGCCGCAGAGGAGAGTGAGATTGGACCCTTTTTACATGGAAGACCATGAAGTCACAAACCAGCAGTTCCAACACTTCACCAACCAGACAGGATACACCACAGAGGCTGAACGTTTTGGAGACTCCTTTGTTTGAGGACTGCTGAGTGACGATGTGAAGGGCACTCTGTCACAATAGGTGGCTGCTGCTCCTTGGTGGTCGCCAGTGAAAGGTGCAGACTGGAGACACCCAGAAGGACCAGATTCAACCATAGAgcaaagGATGAATCACCCTGTTTTGCATGTGTCATGGAGTGATGCACAGGCGTACTGTCACTGGGCCAGACGCAGACTTCCTACTGAAGCTGAGTGGGAGATGGCCTGTAGAGGAGGACTGCAAGATAGGCTGTACCCATGGGGAAATAAACTACTGCCCAGAGGGCAGCACTATGCTAACCTTTGGCAAGGTGATTTTCCTAACCGCAACACAGCAGAGGACGGCTTTGCTAACACATCACCGgtgatgtcatttcctgcaAATGGCTTTGGGCTGTATGATATGGTGGGAAATGCATGGGAGTGGACGGCAGACTGGTGGAATGTGCATCACTCTACAGAAGCCAAGCAGAACCCTAAAGGACCAGAAACAGGGACAGACAGAGTCAAGAAAGGAGGCTCCTACATGTGTCACAAGtcTTACTGCTACAGATACAGGTGTGCAGCCCGTAGTCAAAATACTCCAGACAGTTCTGCCTCTAATCTGGGCTTCCGCTGCGCTGCTGACGCTGATCCATGACCTCAAACATGAGGTCTATCACTGTCATCACATGAAATCAAGAatgattgtgtgtttttatgtaaataaatccatttgtaaaatg

Function

symbol description
sumf1 Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in mucosulfatidosis. Orthologous to human SUMF1 (sulfatase modifying factor 1).

NR:

description
sulfatase-modifying factor 1 isoform X2

GO: NA

KEGG:

id description
K13444 SUMF1, FGE; formylglycine-generating enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242483.1 True 1309 mRNA 0.49 11 19560562 19568042

Neighbor

gene id symbol gene type direction distance location
myl6 myl6,zgc:153867,LOC107585121,LOC105013534,LOC108440770,LOC108271738 coding downstream 8705 19547029 ~ 19551857 (-)
pfkmb pfkmb,LOC107673583,LOC107711051,LOC107585122,LOC107582696,LOC107748387,LOC107667407 coding downstream 59477 19486992 ~ 19501085 (-)
itgb7 itgb7,LOC107711053,LOC107673468,LOC107667391,LOC107582697,LOC107740576 coding downstream 73715 19477718 ~ 19486847 (-)
espl1 espl1,LOC107711058,LOC107673592,LOC107740575,LOC107667390 coding downstream 83006 19465314 ~ 19477556 (-)
pfdn5 pfdn5,LOC107667318,LOC107711057,LOC107740577,LOC107673463 coding downstream 96016 19462391 ~ 19464546 (-)
si:dkey-197j19.5 efcab12 coding upstream 41758 19609800 ~ 19612454 (-)
uroc1 uroc1 coding upstream 45062 19613104 ~ 19619818 (-)
chchd4b LOC107711045,LOC107673517,LOC107580698 coding upstream 52115 19620157 ~ 19621083 (-)
sec61a1 sec61a1,LOC103023094,LOC108440718,LOC103358725,LOC108436273,LOC102228108,LOC107673516,LOC107384934,LOC106518493 coding upstream 54513 19622555 ~ 19627477 (-)
ip6k2b ip6k2b,LOC107585112,LOC107673575,LOC107711042,LOC107748392,LOC107582690,LOC107667389,LOC103024783 coding upstream 65137 19633179 ~ 19637946 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 162832 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 317751 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 408868 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 511726 19044628 ~ 19048836 (-)
G46476 NA non-coding downstream 516693 19043616 ~ 19043869 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding upstream 38320 19606362 ~ 19607056 (-)
G46658 NA non-coding upstream 223600 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 233201 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 266028 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 309270 19877312 ~ 19880588 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 4620 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 410831 19115061 ~ 19149731 (-)
G46478 NA other downstream 504431 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 843074 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 852966 18706623 ~ 18707596 (-)
tomm6 NA other upstream 273437 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 275002 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 331630 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 430590 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 527982 20096024 ~ 20102459 (-)

Expression


Co-expression Network