jade3 (LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568)


Basic Information

Item Value
gene id jade3
gene name LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18099864 ~ 18109115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242524.1
AGTTTAGGACCCAGCGGTCGGGTAGTACAATAGAGCTGTTGTGTCGTGGTGAGAGGGTGATTTCTGCTTTTGGGATATTGACAGTgggacagaaaagaaaaaaacaacgaaAATACGAATATTTGTCGCATCTCTAGACGGCCGGCTCGCATACGGCCTCGCGGAGTCTGTCGCTGCGCGCGATCGTCCAGAAACGCTGGCTTTTTGGATGAGAGGCATGAGCgagaggcagaggaagcatAGTGGAGGAAAACAGTAGCATGCTTTTTGAATTTATGGATACGTCAGGATGAAACGCCTCAGGACTTCAAGCAGCAGTGACAGTTCAGACAATGAGAGTCCCTCGACATCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGGTGTTCAGAAAAGACTTGATCAGTGCCATGAAGCTTCCAGACTCTCACCATATTTCTCATGACGATTATTACCTGTTGGCGGACACTTGGAAGCAGGAATGGGAAAAGGGTGTACAAGTACTCGCTAGTCCAGACACTATCCCTCAGCCCTCTGTGAGGATAATAGCAGAGAAGCCAAAAGAGGTCCTCTTCAGTAAGCCAAGGAAATATATTCAATGCTGGAGCCAGGACTCTACAGAAACGGGTTACGTTAACATTAAGGAGCTAGCGGAGGCTATGTGTAGATACGACCTGGACGATATGGATCTGTACTGGCTTCAGCAGCTCAATGCAGAACTTGGGGTGATGGGTGACGGGCCGGTGGATGAGCTGACGATGGAGCGGGTGATGGAGGCACTGGAGAGACAGTGCCATGACAACATGAACCACGCCATCGAGACTGAGGAAGGGTTGGGAATAGAGTACGATGAGGACGTCATCTGTGATGTATGTCGCTCACCTGACAGCGAGGAGGGCAACGACATGGTCTTTTGCGACAAGTGTAACATTTGTGTGCACCAGGCCTGCTATGGCATTGTGAAAGTGCCAGATGGGAACTGGTTGTGCAGGACGTGTGTGCTTGGCATCAATCCCCAGTGCCTTCTGTGTCCTAAAAGAGGGGGTGCAATGAAGGCCACACGGGCAGGCACTAAATGGGCTCATGTAAGCTGTGCTCTCTGGATACCAGAGGTGAGCATTGCATGCCCAGAGAGGATGGAACCCATCACCAAAGTGTCTCATATTCCTCCCAGTCGCTGGTCGCTCATCTGCAGTCTCTGTAAACTCAAGACTGGAGCCTGTATACAGTGTTCGGTTAAGAACTGCACCATCCCTTTCCACGTCACTTGTGCTTTTGAACACAACCTGGAGATGAAGACCATCCTGGACGAAGGCGATGAGGTCAAATTCAAATCCTACTGTCTGAAGCATAGCAAACCCAAAGTAGGAGAAGTAGGCTTGAGTCCGGCCTGTCATAAACCTCCCACTGAGACTGAGAAAGTAGGCTTGAGGGCGCAGAAGCTtcaggagctggaggaggagttCTACACACTTGTTCATCCTGAGGAAGTGGCCCAAGACCTTGGACTGCCAATGAACCTGCTGGATTTTATCTTTCAGTACTggaagatgaagaggaaaagCAATTTTAACAAGGCCCTGCTGCCGCCTAAAGAAGATGAAGAGAACCTGCTCTTACAGCCACAGGAGGACAGTATCCACACACGAATGCGCATGTTTATGCATCTGAGGCAGGACCTGGAGAGGGTGAGGAACTTGTGTTATATGGTGAGTCGGAGAGAGAAACTCAAGCTGTCTCAGAGTAAAGCTCAGGAGCAGATCTTCAATCTACACGTCAAACTCATCAACCAAGAGTTATCTGCAGGGCTCCCAGTTTCCTCGTCTTTAGAGAACCTATTGTTTCACCCTCCTAGGATAACCCTAAAACTCAAAATGCCCAAAGTGTCGCTTGGCAATGGCAAAACCAACTCTAAATCTGGAAATGGCCCCCTGTGCCCGGATAACAGCGGTAACGTATATGACGCTGGTGAGGGAGGCATCGGTCAGGGCAAACCGCAACTCCATCTCGGACGAGTAAGGATAGAGGAGCGTGCCAATGGTCTCCTGCCAGCCTCCATCTACATTCGACGAGACGGCGGGACTCCCCCATTGGTCATGAAGCAATCTGGCAAACCCTTAGCTCTGCACGCTGCCCTCCACGGTCATTCGTCCAATAGGAAAGGCAAGACCGATCCAGAGAAAACACGCCAATTAAAACCCAACGGCATTATGGACAAACCCGTACTCCAAAGAGACACTTCCTGCCAGACGCCCACTGAAAAGGACACATGCAATGAGATTTCAGGGAAAAGTCAGTCAGGTGGATTCCACAAAACCTCTCTTGAGCATTTTAGTCGATCACTCAAGGAGGCCACTGTCAGTTTAGTACGGACTGAGGACCTTCGGGCTTTTGAGAAGAACGCACGCAAGTCATCCTCATTCTCCAAACCGCTTTCCAATGAGAGGCCCCTAGGGGGCAGCAAAACCTGCCAGGAGAGCGACGGTTACTGCCCGGATGCAGAGCTCAGTGACTCTGAGCCCGAGGCTAAAGGAAAGTGCCGACAGGGAGTGAGGGGGCAAAACCAGAGAGGACCCGCTGGAAACTACGTCAAGTCTACCAGCAGAGCAAAACTGTCTTTTGGTTCTCGGACATCAGTTCAAAGGTGACAATCTGCAAAGCATTAAAAGCATCTCCAACCCACTGCCACAGATTACTGTAGTCCTCTGGCGGTACTCGGAAGCGCCAGATTCTGTTTTCCTCTGTTGAGGATCTGCCGATGATTTTTAGTACAGTGTGCCAAAAAGTTCTCCCTGGCAAGTGATTGGTCTATTTTTGTGTTGGACTGATAAATATCACTGTGTCTCTCAAACCAGCCATAGTGTTTCTGCTGCACTCGGATTCAGTGCATGAGAGCACGTCTACAGTAGGTTTTATGGGCCTTGAAACAGTGTTTCTGTACATAAAAGGAACCTCACTTTTTAGACTGTACATAGTAGTTTGTGTTAAGATGTGGAGCACATTGAGAGGCTTTCCACGTACTGAAACTTTATCCTACTTTCTTACCGATATgcttatgcaaataaataaagacttaaGATCTCTGGTTTGACAAATCA
>XM_043242525.1
TATCCAGGCCTGCTTCCCACAGCTCCTTTACGAGCAGGATTTACGTTCGCGTTTAGACAACCGTGACAATATTGGCAGCGGCGATATCGTTATCCTCGCGTCAAAGTTTGCGATCTTCGCACAGAGCGTTGTTGCGCAGCCACAGGAAGTGTTACTGTAGCAGGAGAACGCATTGTAGCGACCGGAGAGGGTTCGTCATGTTGGGCGGCTCGAGTTTGGCGCCAAGGCCGTCAGAAACGCTCGCGCGTGCAGCAATGGAGGACACCAGCATGCACGCGCGGCCCCGGCGGTGCTGGTCGGTGAGACTTTACAGTGAAGCGCCGCTGTGTTTACCTCTCCGTTCTTTATTAAGCTGTGCGAACTCGCGGAGTCGATCTGTTCGCTCAGCACGGGGATAATAACTCGAGTGGGAAGCGGTCATGACAACACAAGGACTCGGCATGAGCgagaggcagaggaagcatAGTGGAGGAAAACAGTAGCATGCTTTTTGAATTTATGGATACGTCAGGATGAAACGCCTCAGGACTTCAAGCAGCAGTGACAGTTCAGACAATGAGAGTCCCTCGACATCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGGTGTTCAGAAAAGACTTGATCAGTGCCATGAAGCTTCCAGACTCTCACCATATTTCTCATGACGATTATTACCTGTTGGCGGACACTTGGAAGCAGGAATGGGAAAAGGGTGTACAAGTACTCGCTAGTCCAGACACTATCCCTCAGCCCTCTGTGAGGATAATAGCAGAGAAGCCAAAAGAGGTCCTCTTCAGTAAGCCAAGGAAATATATTCAATGCTGGAGCCAGGACTCTACAGAAACGGGTTACGTTAACATTAAGGAGCTAGCGGAGGCTATGTGTAGATACGACCTGGACGATATGGATCTGTACTGGCTTCAGCAGCTCAATGCAGAACTTGGGGTGATGGGTGACGGGCCGGTGGATGAGCTGACGATGGAGCGGGTGATGGAGGCACTGGAGAGACAGTGCCATGACAACATGAACCACGCCATCGAGACTGAGGAAGGGTTGGGAATAGAGTACGATGAGGACGTCATCTGTGATGTATGTCGCTCACCTGACAGCGAGGAGGGCAACGACATGGTCTTTTGCGACAAGTGTAACATTTGTGTGCACCAGGCCTGCTATGGCATTGTGAAAGTGCCAGATGGGAACTGGTTGTGCAGGACGTGTGTGCTTGGCATCAATCCCCAGTGCCTTCTGTGTCCTAAAAGAGGGGGTGCAATGAAGGCCACACGGGCAGGCACTAAATGGGCTCATGTAAGCTGTGCTCTCTGGATACCAGAGGTGAGCATTGCATGCCCAGAGAGGATGGAACCCATCACCAAAGTGTCTCATATTCCTCCCAGTCGCTGGTCGCTCATCTGCAGTCTCTGTAAACTCAAGACTGGAGCCTGTATACAGTGTTCGGTTAAGAACTGCACCATCCCTTTCCACGTCACTTGTGCTTTTGAACACAACCTGGAGATGAAGACCATCCTGGACGAAGGCGATGAGGTCAAATTCAAATCCTACTGTCTGAAGCATAGCAAACCCAAAGTAGGAGAAGTAGGCTTGAGTCCGGCCTGTCATAAACCTCCCACTGAGACTGAGAAAGTAGGCTTGAGGGCGCAGAAGCTtcaggagctggaggaggagttCTACACACTTGTTCATCCTGAGGAAGTGGCCCAAGACCTTGGACTGCCAATGAACCTGCTGGATTTTATCTTTCAGTACTggaagatgaagaggaaaagCAATTTTAACAAGGCCCTGCTGCCGCCTAAAGAAGATGAAGAGAACCTGCTCTTACAGCCACAGGAGGACAGTATCCACACACGAATGCGCATGTTTATGCATCTGAGGCAGGACCTGGAGAGGGTGAGGAACTTGTGTTATATGGTGAGTCGGAGAGAGAAACTCAAGCTGTCTCAGAGTAAAGCTCAGGAGCAGATCTTCAATCTACACGTCAAACTCATCAACCAAGAGTTATCTGCAGGGCTCCCAGTTTCCTCGTCTTTAGAGAACCTATTGTTTCACCCTCCTAGGATAACCCTAAAACTCAAAATGCCCAAAGTGTCGCTTGGCAATGGCAAAACCAACTCTAAATCTGGAAATGGCCCCCTGTGCCCGGATAACAGCGGTAACGTATATGACGCTGGTGAGGGAGGCATCGGTCAGGGCAAACCGCAACTCCATCTCGGACGAGTAAGGATAGAGGAGCGTGCCAATGGTCTCCTGCCAGCCTCCATCTACATTCGACGAGACGGCGGGACTCCCCCATTGGTCATGAAGCAATCTGGCAAACCCTTAGCTCTGCACGCTGCCCTCCACGGTCATTCGTCCAATAGGAAAGGCAAGACCGATCCAGAGAAAACACGCCAATTAAAACCCAACGGCATTATGGACAAACCCGTACTCCAAAGAGACACTTCCTGCCAGACGCCCACTGAAAAGGACACATGCAATGAGATTTCAGGGAAAAGTCAGTCAGGTGGATTCCACAAAACCTCTCTTGAGCATTTTAGTCGATCACTCAAGGAGGCCACTGTCAGTTTAGTACGGACTGAGGACCTTCGGGCTTTTGAGAAGAACGCACGCAAGTCATCCTCATTCTCCAAACCGCTTTCCAATGAGAGGCCCCTAGGGGGCAGCAAAACCTGCCAGGAGAGCGACGGTTACTGCCCGGATGCAGAGCTCAGTGACTCTGAGCCCGAGGCTAAAGGAAAGTGCCGACAGGGAGTGAGGGGGCAAAACCAGAGAGGACCCGCTGGAAACTACGTCAAGTCTACCAGCAGAGCAAAACTGTCTTTTGGTTCTCGGACATCAGTTCAAAGGTGACAATCTGCAAAGCATTAAAAGCATCTCCAACCCACTGCCACAGATTACTGTAGTCCTCTGGCGGTACTCGGAAGCGCCAGATTCTGTTTTCCTCTGTTGAGGATCTGCCGATGATTTTTAGTACAGTGTGCCAAAAAGTTCTCCCTGGCAAGTGATTGGTCTATTTTTGTGTTGGACTGATAAATATCACTGTGTCTCTCAAACCAGCCATAGTGTTTCTGCTGCACTCGGATTCAGTGCATGAGAGCACGTCTACAGTAGGTTTTATGGGCCTTGAAACAGTGTTTCTGTACATAAAAGGAACCTCACTTTTTAGACTGTACATAGTAGTTTGTGTTAAGATGTGGAGCACATTGAGAGGCTTTCCACGTACTGAAACTTTATCCTACTTTCTTACCGATATgcttatgcaaataaataaagacttaaGATCTCTGGTTTGACAAATCA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein Jade-3

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22156 JADE3; protein Jade-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242524.1 False 3133 mRNA 0.49 12 18099864 18109115
XM_043242525.1 True 3356 mRNA 0.50 12 18099864 18108841

Neighbor

gene id symbol gene type direction distance location
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding downstream 3329 18091115 ~ 18096535 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding downstream 9333 18088060 ~ 18090531 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding downstream 16191 18079634 ~ 18083673 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 38979 18045653 ~ 18060885 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 59511 18028054 ~ 18040353 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding upstream 1531 18110646 ~ 18116377 (-)
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding upstream 45434 18154549 ~ 18155965 (-)
LOC122346611 fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295 coding upstream 78313 18187428 ~ 18191523 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding upstream 89868 18198983 ~ 18205234 (-)
nipa1 nipa1,LOC107716965 coding upstream 96536 18205651 ~ 18207634 (-)
G46074 NA non-coding downstream 2374 18097068 ~ 18097490 (-)
LOC122346732 nit2 non-coding downstream 32915 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 55234 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 277129 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 291749 17807621 ~ 17808115 (-)
G46092 NA non-coding upstream 8241 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 140819 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 223728 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 250564 18359679 ~ 18359981 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding upstream 494876 18603991 ~ 18686824 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 325757 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 685725 17382327 ~ 17414139 (-)
G45910 NA other downstream 791386 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 853478 17235790 ~ 17246386 (-)
G45895 NA other downstream 912546 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 535191 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 597508 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 605059 18714174 ~ 18717488 (-)
G46478 NA other upstream 946031 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1005946 19115061 ~ 19149731 (-)

Expression


Co-expression Network