si:dkey-45d16.4 (si:dkey-45d16.4,LOC107681484,LOC107569613,LOC107711600,LOC108424794,LOC103024355,LOC108273264)


Basic Information

Item Value
gene id si:dkey-45d16.4
gene name si:dkey-45d16.4,LOC107681484,LOC107569613,LOC107711600,LOC108424794,LOC103024355,LOC108273264
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8547278 ~ 8549239 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242528.1
acacacacacagacgggaAAACATGGAACGCGGTTTCTCTCTCGCTGGACCTTCTTCTAATCCTCGTAAACGCCAAGTACGATTTTCAGCACGTCATGACATCCTGCTCCTCCGTGAGGTGATAGCACAGAACCCATTCACTTCTAAAGAGTCAGGCCGAATCTGGGCGAGGGTGGGTGAAATTATAACTGCGACTCTACAGGATGAGAACTTTGAGGTGGACGGACGCAGATGCAGGGAGAGAACCATGCTACTGTTggattattataaaaaacagGACTTTGCAAGTCTACGCAGGTTTGGTACAGAACGCCTGTATGCACAGAAAGAAGACCTGTTGCATGAAGTTCTGGAGCTGGAGGCAGAGAAGAATCTTCTGGCAAGTGGGGAAAGTAAATACCAAGATGACGAACTCAGGAAGAGAGCACTGGAGGAATTATCATCCCCTGAGCCTGACAAATCCACAGTGCTCTCAGTAACAGCAGCTCCCCCCACTGtgGTAGCCAGCCCAGAACctgaggagcaggaggaggcTGAGCTCACAGCGCCCACAGCCAAAAGGCCATGCCAGTGCTGCTGCCAGACCTACTCAGAGATCTTAAGCTTCTTAGAAAAGCGATTTGAAGCAGAGCAGAGTCTGCGAGAGGAGGAAATGGCACTTAGAAGAGAGGAGCTAGAAATCCAGAGGAATAAGATTGCCCTGGATCGGGAGCGTCTCGGAGCAGAAAGAAAAGAGCGGGAACGTCGGTTTGAGCTAGAGAGTCAGGAAAGACAGGTTATATTGGATTTGTTAAAAGAGAAGGTCCTAAAAAACGAACGAAACTCTGACTGAAATGAgttgaaatttttacttttagtctTTGATGTTGAAGTGTCATTCCAGTCAATGCTGTATTCTGTTTTCTCAGTTTGAATTGGTTTTATAGCATGAAAATAACATAATCCGATGATATTATAGCtcattgttgaataaaatggCCAAATGTC

Function

NR:

description
PREDICTED: scaffold attachment factor B1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242528.1 True 987 mRNA 0.46 4 8547278 8549239

Neighbor

gene id symbol gene type direction distance location
LOC122346602 NA coding downstream 22285 8506768 ~ 8524993 (-)
nprl2 nprl2 coding downstream 46010 8496635 ~ 8501268 (-)
gga1 gga1,LOC107712552,LOC107656124,LOC107586353,LOC107710174,LOC107691488 coding downstream 67442 8466738 ~ 8479836 (-)
cfap100 cfap100,LOC107562886,LOC107691496 coding downstream 107893 8431444 ~ 8439385 (-)
plxnb1b LOC107755667,LOC107586348,LOC107656121,LOC107691484 coding downstream 129508 8381140 ~ 8417770 (-)
ube2o ube2o,LOC100331775 coding upstream 308295 8857534 ~ 8883164 (-)
LOC122347059 rhbdf2 coding upstream 337269 8886508 ~ 8932433 (-)
acox1 acox1 coding upstream 383844 8933083 ~ 8951173 (-)
evpla evpl,LOC107742557 coding upstream 406017 8955256 ~ 8967380 (-)
srp68 srp68 coding upstream 422435 8971674 ~ 8995633 (-)
G43739 NA non-coding downstream 715 8546353 ~ 8546563 (-)
G43734 NA non-coding downstream 50645 8495764 ~ 8496633 (-)
G43719 LOC108424762,LOC107710154,LOC107562891,LOC556764 non-coding downstream 80632 8460906 ~ 8466646 (-)
G43710 NA non-coding downstream 92415 8454131 ~ 8454863 (-)
G43712 NA non-coding downstream 94959 8450787 ~ 8452319 (-)
G43791 NA non-coding upstream 50557 8599796 ~ 8794740 (-)
G43800 NA non-coding upstream 157547 8706786 ~ 8707974 (-)
G43855 NA non-coding upstream 473280 9022519 ~ 9022881 (-)
G43856 NA non-coding upstream 475969 9025208 ~ 9025429 (-)
G43881 NA non-coding upstream 701460 9250699 ~ 9251679 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 499270 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 776827 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 960911 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 1217713 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 1232504 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 159467 8708706 ~ 8713858 (-)
G43890 NA other upstream 711377 9260616 ~ 9261245 (-)
G43896 NA other upstream 716763 9266002 ~ 9267324 (-)
G43899 NA other upstream 719949 9269188 ~ 9270922 (-)
G43900 NA other upstream 722179 9271418 ~ 9272305 (-)

Expression


Co-expression Network