phb2b (phb2b,LOC107692360,LOC107591156,LOC108427714)


Basic Information

Item Value
gene id phb2b
gene name phb2b,LOC107692360,LOC107591156,LOC108427714
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13820119 ~ 13823792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242542.1
AGGAGTACTACATTACCCACAATTCCTTCCGGTTTAAGCGGAAGTTGTTTGTGACGACCTTGGGTAGCTCTTGCAAGCATGGCGAATAAAGAGCCTAACAGGTTGCTCCAGAACCTAAAGGACCTCGCCGGACGTATGTCCTCTGGATCAAAGGGTGCCGGACTTGGCCTGAAGTTATTAATTGGAGCAGGTGCGCTTGCTTATGGAGTCAAAGAGGCCACCTATACAGTGGAGGGTGGTCAGCGTGCCATTATCTTTAGTAGAATTGGAGGGATGCAAATGGACACAGTCCTCTCTGAGGGTCTCCACTTCAGgATACCATGGTTTCAATATCCAATTATATATGATATCAGAGCCAGGCCAAGAAAAATATCATCTTTAACAGGAAGCAAAGACCTGCAGATGGTGAACATTGCATTGCGTGTGCTGTCACGACCTGTGGCCTCCAACCTTCCTGTCATGTACCAGCAGCTGGGGAAGGACTACGACGAGCGCGTGCTGCCGTCCATTGTAAATGAAGTTCTGAAGAGCGTGGTCGCCAAATTCAACGCATCCCAACTAATTACACAAAGAGCCCAAGTCTCTCTGCTCATCCGACGGGAGCTCTTCGAACGCGCTAAGGACTTCAACATTATTCTCGATGACGTGGCCATCACGGAGTTGAGCTTCAGCAAGGAGTACACAGCGGCTGTGGAGGCCAAACAAGTCGCCCAGCAGGAGGCGCAAAGAGCTCAGTTCTTTGTGGAGAAAGCCAAACAAGAACAGAAGCAGAAGATCATCCAAGCTGAAGGAGAGGCTCAGGCAGCCAAAATGTTAGGGGAGGCCGTCACAAAGAACCCTGGATACCTCAAACTAAGAAGAATCAGAGCAGCGCAGAACATCGCCAAAACGGTGGCGGCTTCACAGAACAAGGTTTACCTGAACGCAGATAGTTTGGTTCTGAATCTACAGGATGACTCTTTTAACAAATTGTCTCTCGGAAAGAAGTAACCCATTCAGAAGCCGATCTCATTCCAGTTGTCAGAGGTTATATTACGAGTAACCGTATATGTGTCCTTTGAGATGGCATTTTAAGATTGAGTCACAAATGAATATGTCCGTCTGGGGAAGACTCATTCAATTTCTAATGGTGTAGTCCTGGTTCGTCGATCAAATTTGACTCCACAGTTTGCTGGTTATCAAATACAGCTTTGTGTTTATCTTCAGCCCAATGAATGAAGGAAACGGTGTACTGTACCAGACCATGTAATGCTTTTCGACGGTGATTGTCATAACAGGAAACATGTCTTTAAATCATACATTAGATGAGCTCAAGGTTGgttgagaaaaaataaatccatccaTTTTCCTAGGAA

Function

symbol description
phb2b Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; optic vesicle; and solid lens vesicle. Orthologous to human PHB2 (prohibitin 2).

NR:

description
prohibitin-2-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17081 PHB2; prohibitin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242542.1 True 1355 mRNA 0.46 10 13820119 13823792

Neighbor

gene id symbol gene type direction distance location
pde6d pde6d,LOC107590678,LOC107591155 coding upstream 200 13813916 ~ 13819919 (+)
usp13 usp13,LOC107659032 coding upstream 97685 13697792 ~ 13722434 (+)
ndufb5 LOC107659010,LOC107709185,LOC107590679,LOC107578042 coding upstream 123330 13693377 ~ 13696789 (+)
actl6a actl6a,LOC107659031 coding upstream 129169 13684429 ~ 13690950 (+)
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding upstream 164963 13652396 ~ 13655156 (+)
ptmaa NA coding downstream 30450 13854242 ~ 13857900 (+)
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding downstream 44085 13867877 ~ 13971903 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 157433 13981225 ~ 13985829 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding downstream 255836 14079628 ~ 14116522 (+)
trnag-ucc_2 NA coding downstream 257141 14080933 ~ 14081004 (+)
G44998 LOC102783117 non-coding upstream 158022 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 162353 13656192 ~ 13657766 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding upstream 169236 13650115 ~ 13650883 (+)
LOC122346508 NA non-coding upstream 225518 13589885 ~ 13594601 (+)
G44899 NA non-coding upstream 402279 13417558 ~ 13417840 (+)
G45056 NA non-coding downstream 12815 13836607 ~ 13836819 (+)
G45070 NA non-coding downstream 36463 13860255 ~ 13860609 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding downstream 168953 13992745 ~ 13996966 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding downstream 192643 14016435 ~ 14128344 (+)
LOC122347615 NA non-coding downstream 305555 14129347 ~ 14131078 (+)
G44887 NA other upstream 410207 13394229 ~ 13409912 (+)
G44645 NA other upstream 710753 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 738000 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1014419 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1293162 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 148381 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1412373 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1535069 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1741189 15564981 ~ 15566668 (+)
G45894 NA other downstream 3362916 17186708 ~ 17187308 (+)

Expression


Co-expression Network