pde6d (pde6d,LOC107590678,LOC107591155)


Basic Information

Item Value
gene id pde6d
gene name pde6d,LOC107590678,LOC107591155
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13813916 ~ 13819919 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242544.1
tctatttacagTAGGTTGAGAGCGGATCAAGTGTATCCGTTCAGATTAAAGCTGGATCTCACTGTAACTAAAAGCTTTTTCGAGGTGGATTCTATgtaattaacaaattattttgtccgatatttattagttattccTTGGCGGAACGTTTTAATTCGTCTCGTTTCATCTGCTGAAGCTGAAGATCCAGGAAAAAGATGTCTTCGGATGAAGACAGAGCGAAGGAGATTCTGAAGGGGTTTAAACTAAACTGGATGAATCTTAGAGATGCAGAGACAGGGAAGGTTCTCTGGCAGGGAACTGAAGACCTTTCTCTTCCTGGGGTAGAACATGAAGCTCGGGTTCCTAAGAAAATCCTGAAATGTAAAGCTGTGTCCAGAGAGCTGAATTTCTCTTCAGTAGAAAAACTGGAAAAATTCCGACTGGAgcaaaaagttttctttaaaggcCAGTGCCTAGAAGagTGGTTTTTTGAGTTTGGCTTTGTGATTCCTAATTCTACAAACACATGGCAGTCTTTGATAGAAGCTGCACCAGAGTCACAGATGATGCCTGCAAATGTCTTAACCGGTAATGTTGTTATAGAGACCAAGTTTTATGATGACGATCTTCATGTCAGCACATCTCGGGTACGACTCTTCTACGTCTGAGACATGGAACCAttaaattttcctttttttttttttttttctttttttttttttactgtcactcCAGAGGATGGACCCATCACTACAAGCTTGAATAGCCAGAGGAGACACTCTACATACTGAGTATTTCTTCTGAGATTCTGTGACAACAGCACGAAAGTGAACATTTCAGTAAAACCCAGTTTCAAGACAAATGGTCACACCAGTTTTATGGCAGATAAGGACTTGTACATAAGAGCTATCATGCTCATGACAACCTGGTTGTGTAAATTAcctgtttgtatatttttcttcttctccttctatAATTCAAACCTGCAATGTACACTGCTTCCTCATCAGCCGTTTTTAAAAGGTTTGCTCCCAGTTTGTGTGGTTATTCATGGtctcattgttttattgttcgtttgtttttgtttttttttttctttgtttttttttttagttaaactgTAAGATAggctgtgttttaaaataaatgatataattatggattaaaatattcatattaatatgtTCTCTCTGGCATTTCTCCCATAATGAGTTATCTTACAAATGTATTGTGTCGTTGCATGtgcatgaatataaaataagtgGAAAATAAGAACAAACCGTTTTT

Function

symbol description
pde6d Acts upstream of or within eye development and kidney development. Predicted to be located in cytoplasmic vesicle membrane; cytoskeleton; and cytosol. Predicted to be active in cytoplasm. Is expressed in epiphysis; olfactory bulb; olfactory placode; and retina. Human ortholog(s) of this gene implicated in Joubert syndrome 22. Orthologous to human PDE6D (phosphodiesterase 6D).

NR:

description
retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13758 PDE6D; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242544.1 True 1269 mRNA 0.37 5 13813916 13819919

Neighbor

gene id symbol gene type direction distance location
usp13 usp13,LOC107659032 coding upstream 91482 13697792 ~ 13722434 (+)
ndufb5 LOC107659010,LOC107709185,LOC107590679,LOC107578042 coding upstream 117127 13693377 ~ 13696789 (+)
actl6a actl6a,LOC107659031 coding upstream 122966 13684429 ~ 13690950 (+)
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding upstream 158760 13652396 ~ 13655156 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding upstream 169643 13638994 ~ 13644273 (+)
phb2b phb2b,LOC107692360,LOC107591156,LOC108427714 coding downstream 200 13820119 ~ 13823792 (+)
ptmaa NA coding downstream 34323 13854242 ~ 13857900 (+)
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding downstream 47958 13867877 ~ 13971903 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 161306 13981225 ~ 13985829 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding downstream 259709 14079628 ~ 14116522 (+)
G44998 LOC102783117 non-coding upstream 151819 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 156150 13656192 ~ 13657766 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding upstream 163033 13650115 ~ 13650883 (+)
LOC122346508 NA non-coding upstream 219315 13589885 ~ 13594601 (+)
G44899 NA non-coding upstream 396076 13417558 ~ 13417840 (+)
G45056 NA non-coding downstream 16688 13836607 ~ 13836819 (+)
G45070 NA non-coding downstream 40336 13860255 ~ 13860609 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding downstream 172826 13992745 ~ 13996966 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding downstream 196516 14016435 ~ 14128344 (+)
LOC122347615 NA non-coding downstream 309428 14129347 ~ 14131078 (+)
G44887 NA other upstream 404004 13394229 ~ 13409912 (+)
G44645 NA other upstream 704550 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 731797 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1008216 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1286959 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 152254 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1416246 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1538942 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1745062 15564981 ~ 15566668 (+)
G45894 NA other downstream 3366789 17186708 ~ 17187308 (+)

Expression


Co-expression Network