zgc:109982 (LOC107678358,LOC106920129,LOC103368644,LOC103139842,LOC107733899,LOC105940069,LOC103463988)


Basic Information

Item Value
gene id zgc:109982
gene name LOC107678358,LOC106920129,LOC103368644,LOC103139842,LOC107733899,LOC105940069,LOC103463988
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10990975 ~ 10996060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242545.1
AAGCAGGCATGAATCAGAAGGCTGTACTGATCACTGGTTGTTCTTCTGGCATTGGATTGGCACTTGCTGTTCGTCTGGCCAAGGATGAGAAAAAGAGGTTTATGGTGTATGCGACTATGAGGAACCTGGCTAAACGTGAAGCTCTGGAGGAGGCGGCAGGTCGTACCTTGGGAAGCACACTGGAGATCAAGCAGCTCGACGTGTGCGACGAGAACTCTATCAAAGCCTGTGTGGACAGCCTGCCCATGCGCAGAGTTGACATTCTCATTAGTAATGCTGGAAAGGGAATCATCGGCCCCATTGAGTGTCAGACCATCGATGAGATGAAATCAGTCATGGACACTAACTTCTTTGGACTTGTGCGAATCCTGAAGGAGATTCTGCCTGATATGAAGAAGAGGAAAAGTGGCCACATAGTGGTAATCAGCAGTGTAATAGGGATTCAGGGTATTTTGTTTAATGACGTTTACGCTGCTTCCAAGTTCGCTGTTGAAGGGTTCTGCGAGAGCCTGGCAGTTCAAGCTCTGAGATTCAACCTAAATATCAGCCTCATCGAACCAGGACCCGTCATCACGGAGTTTGAGCGTAAGGTGTATGAGGAAGGATTGAAGATAGATCTCTCCAAAGCTGATAAAGTGACAGCAGATATGTTTACCAACATCTACATGAAGAATTACAACCAGATATCAGAGAGTCTTGGACAAACTCCAGAAGATGTTGCAGAGCACACATTCAGAATGATTACCATGAACAATCCACCGTTTCGCCATCAGACTAACCGTCTGTACACCCCCATGACCACGCTAAAATATACGGATCCAAACGGTGACTTTCCCATCGAAACCTTCTACAAAATGGTGTTTGAACATGACAAGGTGTTCAATGCAAGTCTCAATTTCCTCAAGCTCCTGCGCTGGAGAAGCCGTAAGAGCTTCACTTTAGAAGACAAGAATGCCTCTTAAAGAATGTTCTGCCGGAGACCTGGGGGTATTCCAGAAAATGGGTTAAACAGTTGGGCAACCTAACCTTTTGGTTCCACAAACTGAGGAAATGTTATGGTATGTAAATAGCCATACAGCAACTTACTCTCTGAACATAACTTGCTCCGGAGCAGGATATATTCCAGAATTTGTTTGCTTCAGATAAATGCCGCTCAGCCTCATAGGAATTCTTGCCTTTTTGTTGAGTCTTCAGTGGGCCTGCTACATGAGAGCAAGgataatgcataatattataattttatatttttatgtaatgtaatttataaataaaaaaatacaactaacaTGCATGTGAGATATATCAAACGTTATCACAAATGTGGAAGTAAAATGGCTAAATCTAAAAAATCTGTGCATGCTGTATGTAGCAGGGATGTCTAATATTGCTTCTTGAGGGCAACTGTCCTCAAGCCAAAAATTCAGGGATTCTCCAACCCTGCTCTTGGAGATCTGTCATCCTGGGGTCAGTTTCCCAAAAACAATATGGTCAGGGAACCTGCGACAACAGTTGGGATACAACAATAGTTGGGAAACGCGTACCTGCAGGAACTCTACAGGATGGTAGCTTGCTAGGAGTAGGGTTGGAGACCCTTGTGATAATAATGATCTAAGTTGACCATTACACTTTGGCCAGTGGTAGAGAGATGTAGAGGTGGGCatctcttcaaaataaaaggaatATTTAGGCTAAACTCTGCTTTATGGTAGGCCTCCAGGAACAGGATGGGACACCACTAGTCATAATACAGCcttaatatcttttattttattttgcatcaaTTCTGCATCACTGAAGTACAGTGGCCTGccaagaaagagaaaaaggatgtgtttaaaaatagacTGCATAACAGTCAGTAAGTACCGATGTGCTTCTTGGCGTTTATTTTCATGGAGTTTGTTTCATGGATTGAACACTCTGTCGAGAATATATTTGTGTTCACCATTAAGTCTGAGTTTTGAAACACAAGGCATCACCTTGTTTTCTGGAATATCCCTAAGGACAACTGACCTGCAGTTCGgtttaaaatcttttctttatttataaaaagagCAAATCATACAGTCTTATATTTTAGCTAAAAGTTGGCAAAAGTTTGTTTATACTAGTTCTGCTGTTAATTG

Function

NR:

description
retinol dehydrogenase 8-like isoform X1

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242545.1 True 2126 mRNA 0.42 6 10990975 10996060

Neighbor

gene id symbol gene type direction distance location
dr1 dr1,LOC107555385 coding downstream 2552 10985524 ~ 10988423 (-)
sec16b sec16b coding downstream 47358 10930570 ~ 10943617 (-)
LOC122346899 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 coding downstream 261706 10717881 ~ 10729269 (-)
LOC122346769 LOC107733892,LOC107555367,LOC107703995 coding downstream 468279 10517118 ~ 10522696 (-)
cfap52 cfap52,LOC107757424,LOC107659863,LOC107703996 coding downstream 474011 10509922 ~ 10516964 (-)
scinla scinla,LOC107730699,LOC107675434,LOC107564434,LOC107678357,LOC107733908 coding upstream 337 10996397 ~ 11005424 (-)
si:ch73-389b16.1 si:ch73-389b16.1 coding upstream 14938 11010998 ~ 11013344 (-)
btbd8 si:ch73-389b16.2,LOC107749984,LOC107678356,LOC107675433,LOC107730686,LOC107555388,LOC107564439 coding upstream 20832 11016892 ~ 11041029 (-)
ephx4 ephx4,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107749983,LOC107675432 coding upstream 45986 11042046 ~ 11054847 (-)
znf326 znf326,LOC107749979,LOC107698885,LOC107564631,LOC107555393 coding upstream 414002 11410062 ~ 11414618 (-)
G44353 LOC107569358,LOC107704001,LOC107555380,LOC107733907,LOC107757425,LOC107660462,LOC105019150,LOC108438877 non-coding downstream 86678 10694602 ~ 10904297 (-)
G44350 NA non-coding downstream 95623 10687060 ~ 10895352 (-)
G44341 NA non-coding downstream 337605 10646133 ~ 10653370 (-)
G44339 NA non-coding downstream 408691 10582033 ~ 10582284 (-)
G44338 NA non-coding downstream 408946 10581409 ~ 10582029 (-)
G44447 NA non-coding upstream 236391 11232451 ~ 11232784 (-)
G44449 NA non-coding upstream 238430 11234490 ~ 11234694 (-)
G44450 NA non-coding upstream 238815 11234875 ~ 11235096 (-)
G44452 NA non-coding upstream 241902 11237962 ~ 11238198 (-)
G44457 NA non-coding upstream 243059 11239119 ~ 11239464 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 5843 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 155450 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 274234 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 481972 10434204 ~ 10509003 (-)
LOC122347367 NA other downstream 632125 10355877 ~ 10358850 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other upstream 58975 11055035 ~ 11069466 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 1529696 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 2659200 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 2722142 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 3164415 14160475 ~ 14193166 (-)

Expression


Co-expression Network