si:dkey-197j19.5 (efcab12)


Basic Information

Item Value
gene id si:dkey-197j19.5
gene name efcab12
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19609800 ~ 19612454 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242557.1
ACATACCCATTGCAGAAGGAATGTGTTTCTTTGGGACCACAAAAATGCAGTGGTAGTGCCTCTAGGAAGCATATAATGGATAAAATGAAAGAACCGACTCGTCCGCACCCGGAACTCCTCGACGCTAGACCTGCAATACCTGCATCGAACCACAGAGGCGCTGCTGAGTTCTGCTCGAGTTCACCTGGAGACAAACCCGAGGACTGGATCAACGACAGGAAAGCGTTCAGAAAAGCGCTAGAACGGATGGGAGATCTGCGCAGGTGGCTCCATAATAAACCCATTCTCACCGACTTGGAGGTCCTCGTTATGGAACGAGAAAGACAAGCTAAGCGGATGTCATCATTCCCTCCAGAAACAAGCACTGTTCCACCACTAGACGCGTCTCCGAGCACGCTCAGATGTGAACTAGAAGAGGTGAAGAGTTTTCTGCGCATGTGCGAATCCTGCAACCTCCTCAAACTCTTGGACTGGAACGGGACTGGTAAATTAAAGCGTGTAGACCTCGCTGCTCTGTTTAAAAAGgaAGGCTTCTTCATACAGCCTGAGCGGCTGAATGTGTTGATGTCCTCTTTGAATAGTAAGGATGGAAAGTCTGTAACTGTGGTAGATGTGGCTGCTGGGATTCAGGCCTGGAGCAAAAAACATCATGAAAACGAAGAACAATCAAGCCCAGgtTATTGGAATGCAGACTGTGAGGGAAGGGTTGGTTCAAGACACCATATTCCAATACACGGAGATGAGATAGATGACCAGGGCATGCAGGATGTGGAGGTGTTAGTGATCATGCGGAGAGTGCTGGCAGCATCCAAGACCTCTTGTCCTTCTACTCTGAGTGGCCCACTGGGCAGAGAAGTGGATCGTTTCAGGAGACTTTGTTTGAGAGAATACCTGAAATCACTGGAACAATGCCAACAACAAGGGATAAATGTGAGGCAGGCCACACTACAGAaagTCCTGTTGCACCCTGGTGATAAATTTGGAGGTTACTTTGGGACATCCAGAACACACCGAGTTGATGGTAGAGCACATAAGAACCACAAAGAGATGAAGCCTGTTTGCTGGACGGACTCTAATCCTTTCTGGCCTGGAAAGGAAGATCATGTGCGCTTGTTTCTGCCTGTGATGACAAGCTCTCCTGCAACGGTTTTATTTCAGCGTATCAAACATACTGTTGCGCCAAGTCCTGGACACTGGCCTGTAAATCATTTAGGATACTCAACCTCTGGAGACATAGAATCTCGCAAAATCTACAGCCTCTAGACCATCTTTGATCTGTATAGAATGTCtgtattaaattgttgttttgacCTTCTAAAAAGTGATTTTCTACCATTAGATGGCGGCACGCAAACACTGAAATACTACTGTAGGTGCGCTGCTATTTTTAGCTACGCAGTTCTTTGCTTTTTTCGCTCAGCATATTGTCCTCTGTGACAACTAAAGCAGTcatgtttgattttaataaatactaaaatg

Function

symbol description
efcab12 Predicted to enable calcium ion binding activity.

NR:

description
EF-hand calcium-binding domain-containing protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242557.1 True 1479 mRNA 0.46 7 19609800 19612454

Neighbor

gene id symbol gene type direction distance location
sumf1 sumf1,LOC107673603,LOC107585117 coding downstream 41758 19560562 ~ 19568042 (-)
myl6 myl6,zgc:153867,LOC107585121,LOC105013534,LOC108440770,LOC108271738 coding downstream 57943 19547029 ~ 19551857 (-)
pfkmb pfkmb,LOC107673583,LOC107711051,LOC107585122,LOC107582696,LOC107748387,LOC107667407 coding downstream 108715 19486992 ~ 19501085 (-)
itgb7 itgb7,LOC107711053,LOC107673468,LOC107667391,LOC107582697,LOC107740576 coding downstream 122953 19477718 ~ 19486847 (-)
espl1 espl1,LOC107711058,LOC107673592,LOC107740575,LOC107667390 coding downstream 132244 19465314 ~ 19477556 (-)
uroc1 uroc1 coding upstream 650 19613104 ~ 19619818 (-)
chchd4b LOC107711045,LOC107673517,LOC107580698 coding upstream 7703 19620157 ~ 19621083 (-)
sec61a1 sec61a1,LOC103023094,LOC108440718,LOC103358725,LOC108436273,LOC102228108,LOC107673516,LOC107384934,LOC106518493 coding upstream 10101 19622555 ~ 19627477 (-)
ip6k2b ip6k2b,LOC107585112,LOC107673575,LOC107711042,LOC107748392,LOC107582690,LOC107667389,LOC103024783 coding upstream 20725 19633179 ~ 19637946 (-)
trnaf-gaa NA coding upstream 53980 19666434 ~ 19666506 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 2744 19606362 ~ 19607056 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 212070 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 366989 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 458106 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 560964 19044628 ~ 19048836 (-)
G46658 NA non-coding upstream 179188 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 188789 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 221616 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 264858 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 355792 19968246 ~ 19968460 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 53858 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 460069 19115061 ~ 19149731 (-)
G46478 NA other downstream 553669 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 892312 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 902204 18706623 ~ 18707596 (-)
tomm6 NA other upstream 229025 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 230590 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 287218 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 386178 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 483570 20096024 ~ 20102459 (-)

Expression


Co-expression Network