sgip1a (sgip1,LOC107659047)


Basic Information

Item Value
gene id sgip1a
gene name sgip1,LOC107659047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15344929 ~ 15394123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242571.1
gtctctctccactCTGCTTTTTTTCCTGCCCTCTTTTGAGCATCCTTTGGTGATCGTGTAGACCACAGCCGCAGTGGCTAGCAGCAGCATCCATGGCCTAAACGCAGAGGACTAAAACATCCACCGGCCCGCCGTACCAAGGATACGGGGACTTTAAAGACGAGGCTGGAAGtgtgctctgttttttttcttacatctCTCCATCTGGTAACCAGGGGCTTCTCTTCTCCCCTCCTCCCATTTCAGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGGATTGAAAAAACGCACCAGGAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACACTGACTCTACGGGGTCACCAGACAGAGATGGTGGAGAGTCCCAAGAGACTGAATCGCCACAGAAAAAGACCAACGGTGCTCCAAATGGCTTCTACGGGGAGATTGATTGGGACAGATATaaCTCGCCTGAGTTAGATGATGAAGGATATAGCATCAGgccagaagaACCAGCCCCCAAAGAAAAGTCTCACTTTTTCTCCTCAAGTGAgtctgaggaagaggaggcacacttaaaaaagtttaaaatcaaaatcagaCCGCTGCCAGCAGACGCTAACATTGCAACTCCCTCGGTAGATGAATTAAAAGCCTCCATAGGCAACATAGCTCTGTCTCCCTCGCCTCTGAGGAATAGTCCGAGACGTAGCCCGGGGCTGGCTAAAAGAAATCCCGGTGAAGAAATTGCACGACCAAGACGTGCTGTTCCAGCGCCTGctcctgctcctgctcctgctcctgctcctgctcctgctcctgctcctgctcctgctcctgCCCCTTCCCCGACACCTGCACCTCCACCCCCTCCTGAGCCTGCTAGTAATAAGAAATCTCCAGTGCCAGAGGATGCAACAGCCTTATTCGGCCCTCCGCTGGAGACAGcctttgatgagcagaagacCAGTGAAGTGGTGATAGAGGAACCTGAGGTTTGGGGTGCACCCCTGCCTGAGCAACACCTAGACTCCTCTCTGGCAAGACCTTTTCCTACAGGAACTCTGCCTCCGCTTCCGCCTAAGAATGTGCCGACTTCCCCCCCTCCGATTGAATCTCCTGCTACAGAACCTACCGATggacagaaagaagaagaaaattcaAGGCAGACCTCGCAGAGGCCCTCTATAGCTGATCTAGACAACATTTTTGGTCCAGAAGACTCTCCAAAACCTGGTGAAGATGTTGGAGATAAGTGGGTCTGCTTCAATGATGAGTCACCTCAAGGACCTCTTTCGGAGGGAGAGCCAGCACCTCCACTACCCTCATCTCCACCTCCCCCAGCAGAACCAGCACCCCCATTACCTAAATCACCCCCTCCAACAGAGGAGCCGAATCCTCCTTTACCAAAATCTCCACCTCCTCCTGCAGAGCCAGCACCTTCTCCTCCTTCCATTGAGTCACCAAAGGATAGCCTCCCTCCTGTCCCACCTGTTCCCAAAGACACCACTCCTTCTCCCCCAACTGTCCCTCCTCCTCCGATTGAAGAGGCCCCACCACCCCCGAAACCAGATGATCTTTCTTACTCCAAAACAGACTTTGCGGCATGTGAGTCCCAATCAGACTCGACCAACAGCCCTCCAACCACTGTAGAGACAAGTGAACGCACAATCCCTCCACCCTTGGTTCTGAACCAAGAGGACAAGAAGAGCCCTGAGGAGACCCCATCAAAAGAGGACCCAAGTGAGAGCAGCGCTTCACCCAAAGAGATCAGTCAAGGACTGCGCTcaacacctcctcctcctccacctcccaCATATAGGGCGGTGGTGTCATCCCCAGGGCCCATACCTCCAGCTGCAACAAGTGGAAATGAAAGTGGCTCCTCCTCCCCTGCACGTCCCTCTACGCCATTGACTACAAGCAGCTCTCCCCCTCCCCCTCCCCCACCTCGGCCACCCTCACGACCCAAACTGCCACCTGGGAAACCAAGCGTAGGGGACGTGAATCGGCCGTTCAGCCCCCCTGTACACTCGTCAAGCCCCCCTCCTCTGGCTCCGTTGGCCCGTGCAGAAAGCACTTCTTCAATCTCCTCCACCAACTCTCTGAGTGCCGCCACTACTCCCACCGTCGGTAAAGAGCTCTCCGTGTCTGTGTCAGAAGATGACGCATTTGTAGACAAACTTCCCAGCTTTGAGAGGCGGGCAGACTTGCCAGCAGGCTGCTCTCGAGGGCCCAGTCCCCTCACAATGGGGGCCCAGGACACCCTGCCCGTGGCTGCAGCTTTCACAGAGACAGTCAGTGCCTACTTCAAAGGAGCTGACCCCAATAAGTGTGTGGTGAAGATCACCGGAGAGATGGTGTTGTCCTTCCCGGCGGGCATCACACGGCATTTTGCAAATAACCCATCGCCTGCTGTGCTAACCTTCAGCATAACCAACTACAGTCGTCTGGAACACGTCCTTCCTAACCCTCAGTTACTGTGCTGTGACACCACACAGCCCAATCCTGACTCAAAGGAGTTCTGGGTGAATATGCCAAACCTGATGACCCATTTAAAGAAGGTGGCCGAGCAGAAACCACAAGCAACTTACTACAATGTAGACATGCTGAAATATCAGgtgTTACCGAAGGGCCTACAGTCCACTCCTCTAAATCTAGCAGTGAGCTGGAGGTGTGAGCCCACCAGTACCGATCTGAGGATAGACTACAAGTACAACGGTGGTGCCATGACCACTCCTGTTGCCCTCAACAACGTTCAGTTCCTCATTCCTGTGGACGGAGGCGTCAGCAAACTACAGGCAGTGCTTCCCCCGGCTGCCTGGAATGCTGAACAGCAGAGAATCTTATGGAAGATTCCAGATATTTCTCAGAAGTCTGAGAATGGAGGTGTGGGATCTCTGCTGGCCCGTTTCCAGCTGACGGAGGGTCCCAGTAAACCGGCTCCGGTGGCCGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCAGGCTGTGACATTGAGCTGGCTGGCCTCGGGTATCGATTTTCCCTCATCAAAAAGAGGTTTGCAGCAGGAAAATACATGGCGGACAACTAAACGACCTGACGCCAGTCTGCATATTTTGGACCAATTCTGAGTATTTAAAACACAGGACATGACCCCTACCTGACCTTATGGATAAACCTTTGTAGATGTACAATACAGGtggacctcacacacacacacactccagcagtATTATATGAGTTGCATTATAAAATGTGGACCGTTTTAGGGTGTACTTCTTATATTTGTGAACCGTACTCACTTTGCAACATC

Function

symbol description
sgip1 Enables SH3 domain binding activity. Predicted to be involved in several processes, including energy homeostasis; positive regulation of feeding behavior; and positive regulation of receptor-mediated endocytosis. Predicted to act upstream of or within plasma membrane tubulation. Located in clathrin-coated pit and cytoplasm.

NR:

description
SH3-containing GRB2-like protein 3-interacting protein 1

GO: NA

KEGG:

id description
K20065 SGIP1; SH3-containing GRB2-like protein 3-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242571.1 True 3299 mRNA 0.53 26 15344929 15394123

Neighbor

gene id symbol gene type direction distance location
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 10996 15331236 ~ 15333933 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 88769 15246429 ~ 15256160 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding downstream 132948 15187162 ~ 15211981 (-)
LOC122346528 LOC107731631,LOC107704508 coding downstream 196844 15144790 ~ 15148085 (-)
LOC122346854 zc3h3,LOC107731631,LOC107556980,LOC107717141,LOC107692390,LOC107704522 coding downstream 224316 15092139 ~ 15120613 (-)
LOC122346414 uroc1 coding upstream 200240 15594363 ~ 15600846 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding upstream 207309 15601432 ~ 15603448 (-)
LOC122347277 endou coding upstream 297139 15691262 ~ 15695534 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 758023 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 860518 16254641 ~ 16256080 (-)
G45560 NA non-coding downstream 24895 15319385 ~ 15320034 (-)
G45543 NA non-coding downstream 105289 15185152 ~ 15239640 (-)
G45532 NA non-coding downstream 190313 15102690 ~ 15154616 (-)
G45355 NA non-coding downstream 439221 14905502 ~ 14905708 (-)
LOC122346442 NA non-coding downstream 688898 14651716 ~ 14656031 (-)
G45579 NA non-coding upstream 88783 15482906 ~ 15484967 (-)
G45554 NA non-coding upstream 92540 15486663 ~ 15489101 (-)
LOC122347074 NA non-coding upstream 186461 15580584 ~ 15581055 (-)
LOC122347378 NA non-coding upstream 193383 15587506 ~ 15588222 (-)
LOC122347411 efcab12 non-coding upstream 196944 15591067 ~ 15592196 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 14078 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1151763 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1559026 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1663635 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 2447211 12525756 ~ 12897718 (-)
insl5a LOC107692440 other upstream 94995 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 141263 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 209787 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 362186 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 664845 16058968 ~ 16059767 (-)

Expression


Co-expression Network