rp2 (rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570)


Basic Information

Item Value
gene id rp2
gene name rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18110646 ~ 18116377 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242642.1
CGCGCAGGTTGCGTGTTCTTGATTACTTTCTGGGGAGGGCGAGAGAGAAGCGGCGCTGCTGCGGCTGATCGAGACTATTTCAGAAACGCGTGGCATTTGCAACAGGAGGGGCGCGCTGACACATCGCACGACTTATCGTCCATAAATGGGGTGTTTCTTCTCCAAAAAATCGAGGAGAAAATCTCCTAAGAAAGACTCAGCTTTGCCCGATGGGGACGACAGCGCTGCGGGCAATGACCTCCCAGAAATCAACAACACTGCGCTGGGCAGCAACAGCAACCAGGAGGCTCCCAAGCAATACAGCTGGGACAAACGAGAAAAGGTTGACCCGAAAGACTTCATGCTGATGGGCCTCAAGAATGAGACAGTGGGCCGGTTACCAGGCAAACTCAATGGCCAGCAGTTTGTCATTCAGGATTGTGAGAACTGTAACATCTACGTATTCGACCATTCGGCGACTATTACCATTGATGACTGCGTGAACTGCCGTATTGTGTTAGGTCCGGTCAAAGGCAGCGTGTTCTTCAGAGACTGCAAAGATATCAAGTGTGTGGTGGCCTGCCAGCAGTTCCGCACCAGGGACTGCAAGAAAATGGACATCTTTTTGTGCTGCGCCACCCAGCCCATCATCGAGTCTTCAACGGGCATGAAGTTTGGCTGCTACCAGTACTACTACCCCGAGCTGGCTTTCCACTTTAAAGATGCCGGCCTCAGCATATTTAATAACAACTGGAGCAATATTCATGACTTCACACCCATCTCTGGAGAAACCAATTGGAGTCTCCTACCGGAAAATGCTGTTGTCCAGGAGTGTGTGCCTCTACCAGATCCCGAGTCAGAATTCAAGTCCGTGAGAATCTCTGCTGAAGCAAGTCGGAGCATAGTGCCCCTGACCAAAGGGGCGCGTCGTACCGAGAGCGAAGAGTCCTGCCTGTTTGTCTTCTTCGCTGGAGACTACACCACTGCTAACGCACGCAAGCTTATTGATGAGGCGAGCGCCAAAGGCTTTGTCCTCATTCAGACCAAAGAGGTGTCCATGCGCCCTGAGGATGTGAACCGAGTGTTCCAGAGTAACGCAGAAAGCCTCACTGAATGGATCACCAAAGGTCCAGTGGTAGCTCTGGAGCTGAATGGAGATGGAGTGGTGGAGGCGTGTCAATCCATTGCCGGTGAAGTGTTCAATGGGACCAAGCTGTTTGTTTCTGAGAGCAAAAATACATCCTCGCGTGATGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGACTGTGAAACTGGCGCAGAGGAGCACCTCAAATTAATGTGGGTTCATATTTGTTTGGCTCATTTAGCGAATTGAAATTACATATGCGAAGCCACTGATATCTTAACTCTTCTAGGGGTTTATAACCACTATTTTAAGAGACAGATTTACTCTGTGATctaaacaattttatattttcatgccAATGAAAGAGGCATTTAGTCAGGTAGGGTATTTGGAACCAATCGGAACCAGTCGTGAAGGCAAGTGCCTTTAGATAAAGAACAAAATCACTGGGACTTTAGTCTAATCAAACATTGCTGTGGACAATTTATCACTTATgctgaaaataatgaatttgattatatagatatttattgaattgtttttttccctaaatGTATAGCTGGAAGTTGTTTTATTCTCCTTTGCTTGTATACATGTTTTCATTACATATTGTATAGTTGTTTAGTTTGTGTATAATAATAGATGTAATCAATATTTGTCAAATGCCAGAAAACGTGAATTGTTAAGTCAGGTTTTTTAttacacagaaatatatatttactttatagccatgtgttttgtttcttttcttgttaGCATGGCTTTTGACTCGTctcaattgtattttttacttttttcagtattttttttattgtaaaccaGTAACATTAGTCCTCAATATAAGTTTATAAATGAACACTGTTCTAATAAGAATGTAAAAGTTCCATCTGATACGTTGAATGTACTACTAAAAGGAGCTTTAGTTGTCTCTTTTACACTGCTCTATTTTTGTAGCAACATTTTAGCAAGCACAAATTTCCTGTGACCAAAAAAAGTTTGTACATTTTGAGAGAATCacagtgtacttttttttttatttctaaatggtTCTTATTTGTACGAGACAATTTTGTAGAGTTGAATATAAGCTGTGATTTGTCAATACATTCATTTTAGTCAAAAGTTAAGCgtcatttctttttatctacaaacagacacaaacacaggtCTGCATCTTATTACACTAATGTATTAAGACTAATATCAACTGGTGCAAACTGGTTTTGTTAGTTCAGTAAATCtgtaaattcagtaaaaatCTGGTTATGTAGAGTTACATAATGTCAGAAACATGACAACAGTTTAAAGGCCAACCCCGGAAGGTTAATTTGGCTTATTATGTGGTGAGGATTACTCAGACTTAATTGTTTTGGTCTACAATATAAATTACACTAGTTATTAAATAAGAACTACAGTGGCTGTCTGATTTGTCAAACTCAAAAATATGTCCCTAAAGAATTTGTAATTCTtgcaattaaaattgtaatttgtcGTCGTA

Function

symbol description
rp2 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

NR:

description
protein XRP2-like

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18272 RP2; protein XRP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242642.1 True 2592 mRNA 0.41 5 18110646 18116377

Neighbor

gene id symbol gene type direction distance location
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding downstream 1531 18099864 ~ 18109115 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding downstream 14111 18091115 ~ 18096535 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding downstream 20115 18088060 ~ 18090531 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding downstream 26973 18079634 ~ 18083673 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 49761 18045653 ~ 18060885 (-)
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding upstream 38172 18154549 ~ 18155965 (-)
LOC122346611 fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295 coding upstream 71051 18187428 ~ 18191523 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding upstream 82606 18198983 ~ 18205234 (-)
nipa1 nipa1,LOC107716965 coding upstream 89274 18205651 ~ 18207634 (-)
LOC122346396 gabrg3 coding upstream 247461 18363838 ~ 18455787 (-)
G46074 NA non-coding downstream 13156 18097068 ~ 18097490 (-)
LOC122346732 nit2 non-coding downstream 43697 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 66016 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 287911 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 302531 17807621 ~ 17808115 (-)
G46092 NA non-coding upstream 979 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 133557 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 216466 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 243302 18359679 ~ 18359981 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding upstream 487614 18603991 ~ 18686824 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 336539 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 696507 17382327 ~ 17414139 (-)
G45910 NA other downstream 802168 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 864260 17235790 ~ 17246386 (-)
G45895 NA other downstream 923328 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 527929 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 590246 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 597797 18714174 ~ 18717488 (-)
G46478 NA other upstream 938769 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 998684 19115061 ~ 19149731 (-)

Expression


Co-expression Network