actl6a (actl6a,LOC107659031)


Basic Information

Item Value
gene id actl6a
gene name actl6a,LOC107659031
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13684429 ~ 13690950 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242699.1
CCAAAAACCACCATAATCCCCTCAAGACAAAGATGTCTGATTCGTTTCCTTTGTTGTGATAGTGAAAATACAAATCGTACGGTTCTTATTTTGTATGCTCCCTTTTAAGATAAGAAATCGAACAGTTTTCTTCTGTCAGTATTGACCAGCCGCAAAAATGAGTGGCGGAGTGTATGGCGGAGATGAAGTTGGAGCTCTCGTCTTTGACATGGGCTCATATTCAGTGAGAGCTGGATATGCAGGAGAGGACTGCCCCAAGGCTGACTTTCCTACTGTGATTGGTGTAACTCTGGACCGGGAGGATGGCAGTACGCCGAtggagacagatggagagaaggGAAAGCAGAGCGGCACCACCTACTACATCGACACCAACCAGCTCAGGGTCCCTAGAGAAAGCATGGAGGTCATGTCACCTCTCAAAAATGGAATGATTGAGGACTGGGACAGTTTCCAAGCCATTTTAGATCACACCTACAAAATGCACTTCAAATCAGAGCCCAGTCTGCATCCAGTCCTGATGTCAGAGGCCTCGTGGAACACACGAGCAAAGCGAGAGAAGCTGACTGAACTAATGTTCGAGCATTACAACATTCCTGCTTTCTTCTTGTGTAAATCAGCCGTCCTGTCTGCGTTTGCCAATGGACGGTCCACTGGTTTAGTGTTAGATAGCGGATCCACACACACCACGGCTATTCCTGTGCATGATGGTTATGTCCTACAACAAGGCATCgtaaagtctcctctcgctggTGACTTCATGAGTATGCAATGTAGAGAGCTGTTTCAGGAGTTAGGTGTTGAAATAGTGCCTCCGTATATGATTGCATCCAAGGATTCAGTTCGTGAAGGCTCTCCAGCCAGTtggaagaagaaagagaaactaCCTCAAGTTACCCGTTCATGGCATAACTATATGTGTAATACCGTCATACAGGATTTCCAGGCCTCTGTGCTGCAGGTGTCAGATTCGCCCTATGATGAACAAGTAGCTGCCCAGATGCCCACTGTTCATTATGAGCTGCCTAATGGTTACAACTGCGATTTCGGAGCTGAAAGACTTAAGATCCCAGAGGGGCTTTTTGACCCTTCAAATGCTAAGGGCCTGTCAGGGAACACCATGCTTGGAGTCGGCCATGTTGTGACCACCAGCGTTGGCATGTGTGACATAGACATTCGACcagGTCTGTATGGTAGTGTGGTAGTTACAGGAGGAAACACTCTCATCCAAGGCTTTACAGACAGACTTAACAGAGAACTCTCGCAGAAGACACCACCAAGCATGCGTTTGAAATTGATAGCCAACAACACAACTGTGGAGCGCAGGTTTAGCGCCTGGATTGGAGGCTCCATCCTCGCGTCGCTGGGAACTTTCCAGCAGATGTGGATTTCAAAGCAGGAGTATGAGGAAGGTGGTAAACAGTGTGTTGACAGGAAGTGCCCTTAACCAGTTCCATCAACACCTGGTTGCCTTCAGAGGgagacgaagaagaagaaaaaaaagacaacaccCCACCATCTAGTAGAAAAAGCCTTCTTAGTGGACTCAGGAACTAACAAGGACagttactgttatttttagtgcAAACAGAccatattttaaacagtttgacATGGTTGCACTCTTTTCTACTCTTCAACACAATATTTTCATAGATCCAGTTTGACCACctgaataattttaaataccAGTGACAAGGTTGTCTTTTGGAACACTGGAGTTATATCCCTCAATTGTATCAGTGCTTAGAACACTtcaaagtgttcttttcttttcttttttacaccACTTTGCCACTTGCTAGAAAACGCACCCAGGAAACCAAATGTTTATGCTTTTAACAATTGATCGGCTGTTTTgggaataaattttttttttgttttgttttgttaaactgGTCTAAATTTCTCTCATATTACATAAAGACATAGAATCATCAGTGTAGTGATTGTGCACATTTGTATTTAAGCGTTTGTTCTAATAATTAGTACATTTCAGCTTGTCTATTCGGACAGTTATTAAAGTTATTCAAAAGAGAGAA

Function

symbol description
actl6a Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to be part of NuA4 histone acetyltransferase complex and SWI/SNF complex. Is expressed in ventricular zone. Orthologous to human ACTL6A (actin like 6A).

NR:

description
PREDICTED: actin-like protein 6B isoform X1

GO: NA

KEGG:

id description
K11340 ACTL6A, INO80K; actin-like protein 6A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242699.1 True 2042 mRNA 0.44 14 13684429 13690950

Neighbor

gene id symbol gene type direction distance location
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding upstream 29273 13652396 ~ 13655156 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding upstream 40156 13638994 ~ 13644273 (+)
atp1b1a NA coding upstream 76915 13598539 ~ 13607514 (+)
rpl5b rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 coding upstream 141862 13536511 ~ 13542567 (+)
LOC122347353 LOC107731845,LOC107659022,LOC107692422 coding upstream 212496 13469404 ~ 13471933 (+)
ndufb5 LOC107659010,LOC107709185,LOC107590679,LOC107578042 coding downstream 2427 13693377 ~ 13696789 (+)
usp13 usp13,LOC107659032 coding downstream 6842 13697792 ~ 13722434 (+)
pde6d pde6d,LOC107590678,LOC107591155 coding downstream 122966 13813916 ~ 13819919 (+)
phb2b phb2b,LOC107692360,LOC107591156,LOC108427714 coding downstream 129169 13820119 ~ 13823792 (+)
ptmaa NA coding downstream 163292 13854242 ~ 13857900 (+)
G44998 LOC102783117 non-coding upstream 22332 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 26663 13656192 ~ 13657766 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding upstream 33546 13650115 ~ 13650883 (+)
LOC122346508 NA non-coding upstream 89828 13589885 ~ 13594601 (+)
G44899 NA non-coding upstream 266589 13417558 ~ 13417840 (+)
G45056 NA non-coding downstream 145657 13836607 ~ 13836819 (+)
G45070 NA non-coding downstream 169305 13860255 ~ 13860609 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding downstream 301795 13992745 ~ 13996966 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding downstream 325485 14016435 ~ 14128344 (+)
LOC122347615 NA non-coding downstream 438397 14129347 ~ 14131078 (+)
G44887 NA other upstream 274517 13394229 ~ 13409912 (+)
G44645 NA other upstream 575063 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 602310 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 878729 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1157472 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 281223 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1545215 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1667911 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1874031 15564981 ~ 15566668 (+)
G45894 NA other downstream 3495758 17186708 ~ 17187308 (+)

Expression


Co-expression Network