mrpl47 (LOC107659009,LOC107732024,LOC107590634,LOC107709209,LOC107692352,LOC107548661)


Basic Information

Item Value
gene id mrpl47
gene name LOC107659009,LOC107732024,LOC107590634,LOC107709209,LOC107692352,LOC107548661
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13691026 ~ 13692826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242700.1
CGCTGCACGCTTCCGTTCATCGTTTGGTTTGACATTGTCAAGATGGCTGCGGCCGTAGCGAGCCGCCTGACTGCCGCTGTCTGCAGACAATTTCAGCGTGTTGTTACagtctcttcacacacacagcctcaATATGCGACTCAAGCATTCTCCAAACTTCCTTTCTGTCAACGAAGTCAACCGCACGGCTCGTGGTGGTTCAGAAGCTCCACGAATAACCGAGCTCTCCACACATCCTGTGTCAGAAACGGACTGGAAGAGTTTTTTGACCTGCCAGAGAACTGGGGTGAAGAAACCGTTAAATCAGGTGCTCCATGGACAGCCAAACAACTTAGAGTGAAAAGTAATGAAGACTTACACAAACTTTGgtATGTtcttttgaaggaaaaaaacatgttacttACTTTAGAACAGGAGGCGAAACGACAGCGGCTTCCGATGCCTAGCCCAGAGCGCCTCAGAAAGGTTGAAAGGTCAATGTTGCGCCTGGACACAATCGTGACAGAACGTGAGAGTGCTCTGCGCTTACTGCAGACGGGACAAGAGAGGGGCAGACCGGGCGAGTGGCGCAGAAATGTCTTTGGCAAAAACATCTGgtACCGTTTCAAGGAACATCCAATCCCCTGGTACCTAAATACTAGATACAAAAGACGCCGATTCTATGAGCCATCACATGTGGCCCCTTACACAAGGTTGAGCCTTGAAAAATACCTGAGGACTAAGATacggaaagaaaaaagagagaagaaaaaccaaaaaaggcTTGCAGAAATGTTTCCAAAAAAGACTGCACTTGCATGAAACCACTGACAAGACTTTTTACGTTTAATATTGTCTTTtcatcatgtcatttttttttttcagttctctAGAAGTTTTAGagattcaataaaaatgtacagtcaaataataaattcaaaccTGTAACTGA

Function

NR:

description
PREDICTED: 39S ribosomal protein L47, mitochondrial

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17428 MRPL47, NCM1; large subunit ribosomal protein L47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242700.1 True 931 mRNA 0.45 7 13691026 13692826

Neighbor

gene id symbol gene type direction distance location
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107548663 coding downstream 52081 13607516 ~ 13638945 (-)
dpt dpt,LOC107659007,LOC107732012,LOC107590680,LOC107692436 coding downstream 105658 13578792 ~ 13585368 (-)
zbtb11 zbtb11,LOC107731844,LOC107659025,LOC107590644,LOC107732022,LOC107692345,LOC107566487 coding downstream 121104 13562045 ~ 13569922 (-)
dipk1ab fam69a,fam69ab,LOC107590645,LOC107659006,LOC107566484 coding downstream 130001 13543207 ~ 13561025 (-)
evi5b evi5,LOC107590647,LOC107692341,LOC107566483 coding downstream 155586 13496135 ~ 13535440 (-)
lrrc7 lrrc7,LOC107709201,LOC107692363,LOC107739104 coding upstream 293221 13986047 ~ 14040163 (-)
cldn33b LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 coding upstream 433748 14126574 ~ 14128317 (-)
lurap1 lurap1,LOC107709195,LOC107590621,LOC107692438,LOC107591165,LOC107659044 coding upstream 487046 14179872 ~ 14190329 (-)
ttc4 ttc4,LOC107659046,LOC107738930,LOC107709194,LOC107692369 coding upstream 504866 14197692 ~ 14200743 (-)
pde4ba pde4b,pde4ba,LOC107659050,LOC107692372,LOC108443455,LOC107591166,LOC105913193 coding upstream 592671 14285497 ~ 14402960 (-)
G45014 NA non-coding downstream 79433 13536944 ~ 13611593 (-)
G44942 NA non-coding downstream 333505 13356987 ~ 13357521 (-)
G44941 NA non-coding downstream 336243 13354307 ~ 13354783 (-)
G44940 NA non-coding downstream 336846 13353915 ~ 13354180 (-)
G44939 NA non-coding downstream 337376 13353364 ~ 13353650 (-)
G45036 NA non-coding upstream 512 13693338 ~ 13694164 (-)
G45039 NA non-coding upstream 4673 13697499 ~ 13697711 (-)
LOC122347350 NA non-coding upstream 130846 13823672 ~ 13835591 (-)
G45058 NA non-coding upstream 144479 13837305 ~ 13837538 (-)
G45064 NA non-coding upstream 149908 13842734 ~ 13848641 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 9732 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 793308 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 2621560 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 2705894 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 2855501 10578989 ~ 10835525 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 25376 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 467649 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 1634757 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 1796292 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 1842560 15535386 ~ 15685485 (-)

Expression


Co-expression Network