psmd12 (psmd12,LOC107688808,LOC107694910)


Basic Information

Item Value
gene id psmd12
gene name psmd12,LOC107688808,LOC107694910
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8202979 ~ 8206792 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242721.1
TCAAgcgacgaagaagaagaagaaaattaaCAGTGAGCTGTGCGGGTTGTAGTTATTACGTTCACGGCGAATTCTTCTTACTACAAGCAGTAATAATGTCTGAGGACAGAGCTGAACGATCAGATGGACGGATAGTGAAGATGGAGATGGACTACAGTGCTACTGTAGATCAGCGTCTGCCGGACTGTGAGAAAATGGCCAAAGATGGCAGACTGCAGGAGGCCGTCGAGAGTCTGCTGTCACTGGAGAAGCAAACAAGAACTGCTTCAGATATGGTGTCCACCTCCAGGATCTTGGTGGCTATTGTTCAGTTATGCTACGAAGCCAAAGACTGGGATGcattgaatgaaaacatcatgcTACTGTCAAAGAGAAGAAGCCAGCTGAAGCAGGCTGTTGCAAAGATGGTCCAGGAATGTTATACATACGTTGATGCTGTGACTGACCTGACAATCAAACTCCGACTCATTGATACGCTACGCACCGTCACTGCAGGAAAGATCTACGTGGAGATTGAGCGTGCCAGGCTGACTAAAACACTGGCCCATATCAAAGAGCAAAACGGAGACGTGAAAGAGGCTGCATCCATTCTGCAGGAACTGCAGGTGGAGACATATGGGTCAATGGAGAAGAAGGAGAAGGTGGAGTTCATTCTGGAGCAGATGAGGCTGTGCATTGCTGTCAAGGACTACATTCGAACGCAGATCATTAGCAAAAAGATCAACACTAAATTCTTCCAGGAGGAGGGCAGTGAGgatttgaaactgaaatattacaatCTGATGATTCAAGTTGATCAGCACGAGGGCTCCTACCTGTCCATATGTAAACATTACAGAGCCATATATGACACTCCCTGTATTCTGGAAGACGCCTCCAAATGGCAGCAGGCTCTGAAGAGTGTGGTGCTCTATGTGATTTTGGCACCGTATGACAATGAGCAGTCTGATTTAGTTCATAGAATCAGCATTGACAAGAAACTGGAAGAAATACCCAAATACAGGGATCTCCTAAAACAGTTCACCACCATGGAGCTGATGCGCTGGTCATCTGTAGTGGAGGATTATGGAAAGGAACTGAGGGAGGGTTCTATGGGAACCCCCGACACTGATGTCTTCACCTGCTCAGAAGAGGGAGAAAAGAGATGGAAAGATCTGAAAAACAGAGTGGTAGAGCATAACATCAGAATAATGGCGAAGTATTACACAAGCATCACAATGGGGAGAATGGCAGCCCTGCTCGACCTCTCTATCGACGAATCAGAAGAGTTCTTATCTAACCTGGTGGTCAATAAGACCATCTATGCGAAAGTGGACCGCCTCGCCGGTATCATTAATTTCCAGCGGCCTAAGGACCCTAACGATCTTCTGAATGACTGGTCTCAAAAACTGAACTCTCTCATGTCTCTAGTCAACAAAACTACTCATCTCATCGCCAAGGAAGAGATGATCCACAACCTCCAGTAGAGCCTGTCAGGGAGTTTTTGGTACACCGTTTTTTCTTTTCACCTTGAAACATTTGATTAAGCAAATGTTAAATAAACCTTTGctgtaaatgctgtttaaatgctgttattgaCAACAGTGTGGCACTCAGACTGAAAACAATGTTAGTCTGTTTCCATAAAATGATTTACTTCGCACTTAAGGTTTCCCCTtatgtttcatgtttgtgaACTCTGACTGTAGTTAGTCCAGAAAAAAAATCGCTCTAAATTCCACATGAAGCCTGACGCCCCTATTGTATAAGTAAATGCcttgtattacatttaaacattattgaaaaaaaaacccataataaCATTGTGATGTTGCTCCAGCATTtacattaaacttttttttttggaaataa

Function

symbol description
psmd12 Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of nuclear proteasome complex and proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 12

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03035 PSMD12, RPN5; 26S proteasome regulatory subunit N5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242721.1 True 1851 mRNA 0.43 11 8202979 8206792

Neighbor

gene id symbol gene type direction distance location
cacng4a LOC107688901,LOC107586376,LOC107716888 coding downstream 138 8199111 ~ 8202841 (-)
cacng1a cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457 coding downstream 14595 8183015 ~ 8188384 (-)
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding downstream 187220 8013125 ~ 8015759 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding downstream 222890 7965748 ~ 7980089 (-)
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding downstream 470655 7725403 ~ 7732324 (-)
c6h22orf23 LOC107716895,LOC107586342,LOC107688809 coding upstream 20632 8227424 ~ 8232954 (-)
ppp1r12c ppp1r12c,LOC107688807,LOC107586341,LOC107710164,LOC107569470 coding upstream 26943 8233735 ~ 8246233 (-)
si:dkey-43k4.5 si:dkey-43k4.5,LOC107716889,LOC107586377,LOC107688900,LOC107569460,LOC107710151,LOC107694904 coding upstream 47245 8254037 ~ 8282084 (-)
mtmr14 mtmr14,LOC107716897,LOC107710166,LOC107569464 coding upstream 88508 8295300 ~ 8305587 (-)
setd5 LOC107710169,LOC107716898,LOC107656119 coding upstream 139969 8346761 ~ 8374675 (-)
G43660 NA non-coding downstream 20097 8182679 ~ 8182882 (-)
G43513 LOC107688815 non-coding downstream 152301 8049397 ~ 8050678 (-)
G43528 NA non-coding downstream 345383 7856465 ~ 7857596 (-)
G43516 NA non-coding downstream 403282 7798124 ~ 7799697 (-)
G43478 NA non-coding downstream 704544 7461191 ~ 7498435 (-)
G43691 NA non-coding upstream 87262 8294054 ~ 8294286 (-)
G43697 NA non-coding upstream 107631 8314423 ~ 8314623 (-)
G43700 NA non-coding upstream 127570 8334362 ~ 8343514 (-)
G43709 NA non-coding upstream 242346 8449138 ~ 8450686 (-)
G43712 NA non-coding upstream 243995 8450787 ~ 8452319 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 154971 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 432528 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 616612 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 873414 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 888205 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 501914 8708706 ~ 8713858 (-)
G43890 NA other upstream 1053824 9260616 ~ 9261245 (-)
G43896 NA other upstream 1059210 9266002 ~ 9267324 (-)
G43899 NA other upstream 1062396 9269188 ~ 9270922 (-)
G43900 NA other upstream 1064626 9271418 ~ 9272305 (-)

Expression


Co-expression Network