cacng4a (LOC107688901,LOC107586376,LOC107716888)


Basic Information

Item Value
gene id cacng4a
gene name LOC107688901,LOC107586376,LOC107716888
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8199111 ~ 8202841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242722.1
AGAGCGCAGATGTCGAAGCAACTgggacatttatatatacatttttaattaaagaatgcTTAAGCTTCCAGTAGAGAGTGCTAGATTCCAGCTTGTTTATTTGGTTCCAGAACGTAACAATTATTTCCAGTGGATTTTCTATAATAACTTTTcaatagatttttaatgttgtaaCCACTGAATAGGTAACAATTGTGGTgttctgtctctttaaaaaaatagtataggGATAAACGCTAACATGGTTCtgctgaggtaaaaaaaaacctgaaaaaacatttatataacgGATAGCTAAATGTGTATATgacttttagttttaaaatagtCATACAATACAAAAGCAATcgttttttacttatttttaccGTCACAGTTAGTTTCCCGATAAAACCTGCGTTCATTTAAGCGGATGAAACGGTGAAAAAAAGTTGGACTTATGTGCTCATCATGCGTGGCTGGATTTAGACACACACGAGAGGTACGTGAAGTCGTGTGGATGCGCTCAGTTCAGTCCAGTCTTCGCCGGCATGGCTTGGTGTGACCGCGGCGTGCAGGTTGTTTTGACGAGCCTGGGCGCGCTGGCGGCCATCAGCCTCATGACCGTCGCGATCGGAACCGACTTCTGGCTTTACTCCAGAGCTCACGTCTGTAACACGACCAACACAACAGATGAAGCCCACACCTTACAGCAGCCGAAGAAAACTCCAGGAGATCTCACGCATTCTGGACTTTGGAGGATCTGCTGTATCGAAGGGATCAACAATGGGAGCTGCTATTGGATCAATCATTTTTCTGTTGATGATGACTATGACGCAGACAACTCAGAATATCTCCTCCGATTAGTGCGAGCATCCAGTCTCTTCCCTATCCTGAGTACCATCCTGCTTCTTTTGGGGGGACTTTGTGTCGGCCTGGGCCAGATTTATAGCAGCAGGAATAACATTCTGTTGAGTGCAGGAATCCTATTTGTAACTGCAGGTCTTAGCAATATCATCGGCATCATTGTTTACATCTCCAGTAATGCCGGAGACCCTAGTGATAAAAAAGGAGAAGATAAGAAAAATCTGTACAGCTATGGATGGTCCTTCTACTCAGGTGTACTCTCCTTTGTTGTGGCGGAGGTCATCGGTGTGTTGGCCGTCAACATTTACATTGAAAAGAACAAAGAGGCTCACTTCAAACactttgaaattattaaatctGTTCCTTCCCCTTCATCATCTCCCTACACAAGCATTCCAAGTTACCATTACAGACAACAACAGTCTCAGTGCTGTCCTCAGTCCAGAGAGCCATCTAAAAACACTTCTCTTGCCACACTTAGCATCACCAGCTCCTCACTCCCTTTTGGGGACATTTTAATGTATACAGTGGGGAGAGAACATCCGCTAAAGTCAGGTGCTCTGGCCTCATATAACACTGATCTTGAACATCCCAACTTTCTGCAAGTCCACAGCCACGTTTCTAAAGATGTGAAGGAAAGTCTGAATCGCAGAATTACTCCTGTATAAACATTCAGTTTGCAGTTACATGaagcattataattattttactcagGATTGATACTTAAATGAGAGTTATAGATTTTTGTGTTGCTCAGAACAAAAGCTCTCTGCACAAttagttccctttcagtcggtcacatCGATATCCTTGTCAATGTTCAACAAACGGGATCTTGCTAGAGAGACCAATGTACTTTGAATGTAAACTAAATAAAGCAGTGGATATTTGCATGCGGTTGATTGCATCCAGTTGCTGTTGAACACACTGTGAGTATAAATATCAGTTATTAAATTCAGAGACTGTCTTTGTAATCAAATCCTtgataatcaatcaatcaatcaatcatttttatttatatagcgcttttaacaaaacaggttgcatcaaagcactgtacagtata

Function

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-4 subunit-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242722.1 True 1912 mRNA 0.41 4 8199111 8202841

Neighbor

gene id symbol gene type direction distance location
cacng1a cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457 coding downstream 10727 8183015 ~ 8188384 (-)
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding downstream 183352 8013125 ~ 8015759 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding downstream 219022 7965748 ~ 7980089 (-)
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding downstream 466787 7725403 ~ 7732324 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding downstream 503992 7661464 ~ 7695119 (-)
psmd12 psmd12,LOC107688808,LOC107694910 coding upstream 138 8202979 ~ 8206792 (-)
c6h22orf23 LOC107716895,LOC107586342,LOC107688809 coding upstream 24583 8227424 ~ 8232954 (-)
ppp1r12c ppp1r12c,LOC107688807,LOC107586341,LOC107710164,LOC107569470 coding upstream 30894 8233735 ~ 8246233 (-)
si:dkey-43k4.5 si:dkey-43k4.5,LOC107716889,LOC107586377,LOC107688900,LOC107569460,LOC107710151,LOC107694904 coding upstream 51196 8254037 ~ 8282084 (-)
mtmr14 mtmr14,LOC107716897,LOC107710166,LOC107569464 coding upstream 92459 8295300 ~ 8305587 (-)
G43660 NA non-coding downstream 16229 8182679 ~ 8182882 (-)
G43513 LOC107688815 non-coding downstream 148433 8049397 ~ 8050678 (-)
G43528 NA non-coding downstream 341515 7856465 ~ 7857596 (-)
G43516 NA non-coding downstream 399414 7798124 ~ 7799697 (-)
G43478 NA non-coding downstream 700676 7461191 ~ 7498435 (-)
G43691 NA non-coding upstream 91213 8294054 ~ 8294286 (-)
G43697 NA non-coding upstream 111582 8314423 ~ 8314623 (-)
G43700 NA non-coding upstream 131521 8334362 ~ 8343514 (-)
G43709 NA non-coding upstream 246297 8449138 ~ 8450686 (-)
G43712 NA non-coding upstream 247946 8450787 ~ 8452319 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 151103 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 428660 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 612744 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 869546 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 884337 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 505865 8708706 ~ 8713858 (-)
G43890 NA other upstream 1057775 9260616 ~ 9261245 (-)
G43896 NA other upstream 1063161 9266002 ~ 9267324 (-)
G43899 NA other upstream 1066347 9269188 ~ 9270922 (-)
G43900 NA other upstream 1068577 9271418 ~ 9272305 (-)

Expression


Co-expression Network