lmo4b (lmo4,lmo4b,LOC107593176)


Basic Information

Item Value
gene id lmo4b
gene name lmo4,lmo4b,LOC107593176
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11695648 ~ 11708480 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242733.1
ctGACACATGTAGAGCACAAGCGACAGGCAGCGGCGAGACACCAGCTCGGAGGACGGTTACAAACTGAGGCTCTCGCTACATCTATGGAAATTACGGAAGACGTTCCCGAACGCTCGTTTGACAAAACCGCAGCCGATCTTTCCAGTGATAGCCAGAACATCTGAAAAGGTGACGGCAACAGTGGAAATATAATCTGAAAACTCCATTTGCTTCACTCTTTCGCAGCAGTGAGAAGTATTCATGCACGCGCTCCGTCTCTGAGTTTGTTGGACTGACCGCGCGCCTTATTTTTACTGCCTACCGACCAAACAGACTGCTGCACGCTTTTCATTAACCATCAaccattgcatttcaaatagACACAATGGTGAACCCTGGAGGAAGTGCCCAGCCCCCACCTGTCGGAGCGGGATCTCTGTCGTGGAAGCGCTGCGCGGGATGTGGGGGAAAGATCGCAGACCGTTTTCTCCTGTATGCCATGGACAGCTATTGGCACAGCCGCTGTCTGAAATGTTCCTGCTGCCAGGCCCAGCTCGGAGAGATCGGCACATCCTGCTACACCAAGAGCGGCATGATCCTGTGTAGAAATGACTACATCAGGTTATTCGGCAACAGTGGGGCGTGCAGTGCGTGTGGTCAGTCCATCCCAGCCAGTGAACTGGTTATGAGGGCACAGGGAAACGTGTACCATCTCAAGTGTTTCACATGTTCTACCTGCCGGAACCGGCTGGTCCCTGGTGACCGGTTTCACTACATCAACGGCAGCTTGTTCTGCGAACACGACAGACCCACAGCACTCATCAACGGCCATTTGAGTTCACTGCAGACTAACCCTCTACTGCCTGACCAGAAAGTGTGTTAGGATGCCGGTGTTGCTCAAAGCAGGATGTGTGCCTTCATTTCAGCCCCTCGCTCATTGTCACAGAAGACCTTTTCGGATCGGACCCCATCCCACTCCTTTTTCTCGCCGATCTCAGGCTCGAGCTCCACCTTGGCCTGCACCAGCCAGAGCCCACCCCACCCCAcccctctctctcccacacacccTTTCCCGCTCCTTTACTCCTAACTCCTGAATCATGGATGGAAAATACCCATGAGGCCCTGGAGGGGGAATACTGAGGACTCTATGAACTGACCCAGGCGAGACCTCTGATCCTGAGGGACTCAAAGACTGACACAGAAAGAGACCGGCTGGAGGACGTTgttttttgggttaaaaaaaaaaaagagagagagacagaaagggtgaaattaaaatgacaaatgaagcTGATCCACTGCAGCGATTTTTTTTGAATCTGCTTTCATAACACTCGTTTGAAAATGTAGTGGGGGAATactgactttcttttttcctttatatTTTTGTCCTACCTTGTCTATTCTCCTTTTCTTCACAACATGGTATCTTCTCTTTCTATATTTTAGATGTTGTAAAGGGAATGTGTTTCATTTCGGATGATATAAAAATCCTGAAGACTGGGTTCGAAGAAGTATCCGTGgcttttttgtggaaatcaaaTCATGAACACTCTTGGTGTATTTGTAAAACTaccatgtacagtatgtatgcatgtaaatgtttttgtcccATTGTGGCTACCGTACATACTACACACAGCAGCTAACCCCGTTCCCTTTCCCCTCCAACCCCGAAATCacgcaacaaacaaaaaatgaagcTCATAGCTGTCAACCTATAAATGCAGAATGAGAGAGAATTCtatttgtgatattttcagAGACATTTGCTCCAATATggtgtatttaattaataaaaaaatgagattaaaaacaTCCCTTTTTTTAATCCTA
>XM_043242735.1
actGACACATGTAGAGCACAAGCGACAGGCAGCGGCGAGACACCAGCTCGGAGGACGGTTACAAACTGAGGCTCTCGCTACATCTATGGAAATTACGGAAGACGTTCCCGAACGCTCGTTTGACAAAACCGCAGCCGATCTTTCCAGTGATAGCCAGAACATCTGAAAAGgaatGATAGTAATTTCGTATAGCGAGAGGGAGACGGATTTGTGACGGGTGGACGCAAATAATGTCCTGGATTAGCGAAATACACAATGGTGAACCCTGGAGGAAGTGCCCAGCCCCCACCTGTCGGAGCGGGATCTCTGTCGTGGAAGCGCTGCGCGGGATGTGGGGGAAAGATCGCAGACCGTTTTCTCCTGTATGCCATGGACAGCTATTGGCACAGCCGCTGTCTGAAATGTTCCTGCTGCCAGGCCCAGCTCGGAGAGATCGGCACATCCTGCTACACCAAGAGCGGCATGATCCTGTGTAGAAATGACTACATCAGGTTATTCGGCAACAGTGGGGCGTGCAGTGCGTGTGGTCAGTCCATCCCAGCCAGTGAACTGGTTATGAGGGCACAGGGAAACGTGTACCATCTCAAGTGTTTCACATGTTCTACCTGCCGGAACCGGCTGGTCCCTGGTGACCGGTTTCACTACATCAACGGCAGCTTGTTCTGCGAACACGACAGACCCACAGCACTCATCAACGGCCATTTGAGTTCACTGCAGACTAACCCTCTACTGCCTGACCAGAAAGTGTGTTAGGATGCCGGTGTTGCTCAAAGCAGGATGTGTGCCTTCATTTCAGCCCCTCGCTCATTGTCACAGAAGACCTTTTCGGATCGGACCCCATCCCACTCCTTTTTCTCGCCGATCTCAGGCTCGAGCTCCACCTTGGCCTGCACCAGCCAGAGCCCACCCCACCCCAcccctctctctcccacacacccTTTCCCGCTCCTTTACTCCTAACTCCTGAATCATGGATGGAAAATACCCATGAGGCCCTGGAGGGGGAATACTGAGGACTCTATGAACTGACCCAGGCGAGACCTCTGATCCTGAGGGACTCAAAGACTGACACAGAAAGAGACCGGCTGGAGGACGTTgttttttgggttaaaaaaaaaaaagagagagagacagaaagggtgaaattaaaatgacaaatgaagcTGATCCACTGCAGCGATTTTTTTTGAATCTGCTTTCATAACACTCGTTTGAAAATGTAGTGGGGGAATactgactttcttttttcctttatatTTTTGTCCTACCTTGTCTATTCTCCTTTTCTTCACAACATGGTATCTTCTCTTTCTATATTTTAGATGTTGTAAAGGGAATGTGTTTCATTTCGGATGATATAAAAATCCTGAAGACTGGGTTCGAAGAAGTATCCGTGgcttttttgtggaaatcaaaTCATGAACACTCTTGGTGTATTTGTAAAACTaccatgtacagtatgtatgcatgtaaatgtttttgtcccATTGTGGCTACCGTACATACTACACACAGCAGCTAACCCCGTTCCCTTTCCCCTCCAACCCCGAAATCacgcaacaaacaaaaaatgaagcTCATAGCTGTCAACCTATAAATGCAGAATGAGAGAGAATTCtatttgtgatattttcagAGACATTTGCTCCAATATggtgtatttaattaataaaaaaatgagattaaaaacaTCCCTTTTTTTAATCCTA
>XM_043242736.1
actGACACATGTAGAGCACAAGCGACAGGCAGCGGCGAGACACCAGCTCGGAGGACGGTTACAAACTGAGGCTCTCGCTACATCTATGGAAATTACGGAAGACGTTCCCGAACGCTCGTTTGACAAAACCGCAGCCGATCTTTCCAGTGATAGCCAGAACATCTGAAAAGACACAATGGTGAACCCTGGAGGAAGTGCCCAGCCCCCACCTGTCGGAGCGGGATCTCTGTCGTGGAAGCGCTGCGCGGGATGTGGGGGAAAGATCGCAGACCGTTTTCTCCTGTATGCCATGGACAGCTATTGGCACAGCCGCTGTCTGAAATGTTCCTGCTGCCAGGCCCAGCTCGGAGAGATCGGCACATCCTGCTACACCAAGAGCGGCATGATCCTGTGTAGAAATGACTACATCAGGTTATTCGGCAACAGTGGGGCGTGCAGTGCGTGTGGTCAGTCCATCCCAGCCAGTGAACTGGTTATGAGGGCACAGGGAAACGTGTACCATCTCAAGTGTTTCACATGTTCTACCTGCCGGAACCGGCTGGTCCCTGGTGACCGGTTTCACTACATCAACGGCAGCTTGTTCTGCGAACACGACAGACCCACAGCACTCATCAACGGCCATTTGAGTTCACTGCAGACTAACCCTCTACTGCCTGACCAGAAAGTGTGTTAGGATGCCGGTGTTGCTCAAAGCAGGATGTGTGCCTTCATTTCAGCCCCTCGCTCATTGTCACAGAAGACCTTTTCGGATCGGACCCCATCCCACTCCTTTTTCTCGCCGATCTCAGGCTCGAGCTCCACCTTGGCCTGCACCAGCCAGAGCCCACCCCACCCCAcccctctctctcccacacacccTTTCCCGCTCCTTTACTCCTAACTCCTGAATCATGGATGGAAAATACCCATGAGGCCCTGGAGGGGGAATACTGAGGACTCTATGAACTGACCCAGGCGAGACCTCTGATCCTGAGGGACTCAAAGACTGACACAGAAAGAGACCGGCTGGAGGACGTTgttttttgggttaaaaaaaaaaaagagagagagacagaaagggtgaaattaaaatgacaaatgaagcTGATCCACTGCAGCGATTTTTTTTGAATCTGCTTTCATAACACTCGTTTGAAAATGTAGTGGGGGAATactgactttcttttttcctttatatTTTTGTCCTACCTTGTCTATTCTCCTTTTCTTCACAACATGGTATCTTCTCTTTCTATATTTTAGATGTTGTAAAGGGAATGTGTTTCATTTCGGATGATATAAAAATCCTGAAGACTGGGTTCGAAGAAGTATCCGTGgcttttttgtggaaatcaaaTCATGAACACTCTTGGTGTATTTGTAAAACTaccatgtacagtatgtatgcatgtaaatgtttttgtcccATTGTGGCTACCGTACATACTACACACAGCAGCTAACCCCGTTCCCTTTCCCCTCCAACCCCGAAATCacgcaacaaacaaaaaatgaagcTCATAGCTGTCAACCTATAAATGCAGAATGAGAGAGAATTCtatttgtgatattttcagAGACATTTGCTCCAATATggtgtatttaattaataaaaaaatgagattaaaaacaTCCCTTTTTTTAATCCTA

Function

symbol description
lmo4b Predicted to enable metal ion binding activity. Is expressed in several structures, including mesoderm; nervous system; optic vesicle; presumptive neural retina; and yolk syncytial layer. Orthologous to human LMO4 (LIM domain only 4).
lmo4 Predicted to enable metal ion binding activity. Predicted to be involved in neural tube closure; positive regulation of kinase activity; and regulation of cell migration. Predicted to act upstream of or within several processes, including cell differentiation in spinal cord; thymus development; and ventricular septum development. Predicted to be located in cell leading edge and nucleus. Predicted to be part of transcription regulator complex.

NR:

description
LIM domain transcription factor LMO4

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24099 LMO4; LIM domain transcription factor LMO4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242733.1 True 1819 mRNA 0.47 5 11695648 11708479
XM_043242735.1 False 1709 mRNA 0.47 6 11695648 11708480
XM_043242736.1 False 1629 mRNA 0.47 5 11695648 11708480

Neighbor

gene id symbol gene type direction distance location
pkn2b zgc:153916,LOC107749976,LOC107662805,LOC107564625,LOC107698884,LOC108413223 coding downstream 214455 11449837 ~ 11481193 (-)
lrrc8c LOC107749978,LOC107593158,LOC107698887,LOC107564627,LOC107675427,LOC107730691 coding downstream 258545 11428874 ~ 11437103 (-)
lrrc8db LOC107749977,LOC107730703,LOC107698886,LOC107564626,LOC107675437,LOC107555394 coding downstream 270855 11415268 ~ 11424793 (-)
znf326 znf326,LOC107749979,LOC107698885,LOC107564631,LOC107555393 coding downstream 281030 11410062 ~ 11414618 (-)
ephx4 ephx4,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107749983,LOC107675432 coding downstream 640801 11042046 ~ 11054847 (-)
hs2st1b hs2st1b,LOC107694133,LOC107679861,LOC107557741,LOC106560611,LOC108427652 coding upstream 26336 11734816 ~ 11786162 (-)
sox14 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676 coding upstream 141778 11850258 ~ 11851231 (-)
trnag-ucc_1 NA coding upstream 264000 11972480 ~ 11972551 (-)
trnap-ugg_4 NA coding upstream 264229 11972709 ~ 11972780 (-)
hdlbpa hdlbp,hdlbpa,LOC107694132,LOC107696756 coding upstream 264985 11973465 ~ 11998495 (-)
G44501 NA non-coding downstream 266885 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 453142 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 453616 11241637 ~ 11242032 (-)
G44457 NA non-coding downstream 456184 11239119 ~ 11239464 (-)
G44452 NA non-coding downstream 457450 11237962 ~ 11238198 (-)
G44705 NA non-coding upstream 441354 12149834 ~ 12437749 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding upstream 815476 12523956 ~ 12525300 (-)
G44737 NA non-coding upstream 887366 12595846 ~ 12965513 (-)
LOC122347051 tmem131,LOC107659030,LOC107692350,LOC107732007,LOC107548642 non-coding upstream 1019651 12728131 ~ 12730973 (-)
G44773 NA non-coding upstream 1182236 12890716 ~ 12891336 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 626182 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 710516 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 860123 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 978907 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 1186645 10434204 ~ 10509003 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 817276 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 1946780 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 2009722 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 2451995 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 3619103 15327583 ~ 15330851 (-)

Expression


Co-expression Network