hs2st1b (hs2st1b,LOC107694133,LOC107679861,LOC107557741,LOC106560611,LOC108427652)


Basic Information

Item Value
gene id hs2st1b
gene name hs2st1b,LOC107694133,LOC107679861,LOC107557741,LOC106560611,LOC108427652
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11734816 ~ 11786162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242737.1
GAATAAAATCCCAGCGTTGAGTGACGCAGGAGAGCAGTGGACGCTCGGAGCCGCGCTGATGTGCAACAACTATAAGAGACCGAGAGTCAGGCGTCCCCGGTCTTAACAGAGCACCACCTTCAGCCAGCAGATGAGCGTCTGAAATGCCTTTGCTCGCGCTGATGTATTCGGTTACAACATCCGTAACTTTACTGTGTTCTCTACGCTTAAACGAGATCATCTGTCCGGAGTCGATATTACTGCTCCAGTAACGGATCGATCCGAGCTTCTCGTTCACATTTTACGGCATGACATGTAGATAATCATCCGGTACTTTGATGGGGCTCCTGAGGATCATGATGCCACCCAAGTTCCAGCTGCTGGCTGTTATGGCGTTTGGAGTGGCGATGCTGTTTATCGAGAACCAGATTCAGAAGCTGGAAGAGTCTCGGGCAAAGCTGGAGCGCACCATGGCCAGACACGAGGTGCGAGAGGTGGAACAGAGGCAGACGCGGGACGGCCTGCGGGAGTCTCCGGCGTTGCCTGAGATCGAAGATCTGATCATCATCTACAACCGTGTGCCCAAGACTGCCAGCACCTCCTTCACCAACATTGCATACGACCTGTGCGGAAAGAACCACTTCCACGTTCTCCACATCAACACCACCAAGAATAATCCAGTCATGTCTCTGCAGGACCAGATGAGGTTTGTAAGGAATGTGACATCCTGGCGAGAAATGAAACCGGGTTTCTACCACGGCCACGTCTCCTATCTGGACTTCACAAAGTTTGGAATCAAGGGGAAGCCGGTATACATCAACATCGTACGGGACCCCATCGAGAGGTTGGTGTCTTACTACTATTTTCTCAGATTTGGAGATGATTATCGGCCAGGCCTCAGACGGAGAAAACAGGGGGACAAAAAGACCTTTGACGAGTGCGTGTCATCTGGAGGTTCCGACTGCGCTCCCGAGAAGCTTTGGTTACAGATCCCGTTCTTCTGTGGCCATTACTCTGAGTGCTGGAATGTTGGCAGTAGATGGGCTCTCGAACAGGCCAAGTATAATTTGGTGAATGAGTATCTGCTCGTGGGAGTGACTGAGGAGCTGGAGGATTTCATCATGATGCTCGAGGCAGCGCTGCCACGATTCTTCAGAGGAGCCACCGAGCTCTACCGCACAGGTAAGAAGTCTCACCTGAGAAAAACCAGCGAGAAGAAACCTCCCACTAAAGAGTCCATCTCAAAGCTGCAGCAGTCCAATATATGGAAGATGGAGAACGAGTTCTACGAGTTTGCGCTGGAACAATTTCAGTTTGTGCGCGCTCACAGCGTCAGGGAAAAAGACGGAGAGCTTTACCTGCTGGCTCAGAACTTCTTTTATGAGAAAATCTATCCAAAAGTAAACTAGAATTGACATCAGCATGGTCCAAGCGTCTTTTGGCCTGTTCATGTACTGTTCTGTCACATTTACTgggaagagaagaaaaggaCTTACAACAATGTGGACACAAATACCTGGAAGTCCTTGACTAGAAGGGGTCAGAGGATTCAAAgtgggttgtttttttgtgttttttttgagagacCTCACACAGTCCTGACTGTGACGCTCAGTATCCAGCCACTTTAAGCCCAGTATCTTTTTATGGACTTGAAAACAACATCACATTTTCACCTGATTCATCATGCCTTCCAGAAGAAAATGACAGAAGCTCTTTGGCCATCAGTCActgttgtggaaaaaaaaaaatcaattttgaaCAGGGTCAAAAGGGTACTGCTTTTTGTACCAGACGTTTGGTACATTGGAGCACCTCCTTATTTTACTACTAACTGTGGTTTTGTGAATTCTTAACACTTTCTCGCATtgtgtatattcatttttaatagaatGCCATGAACAGTGTTTACAGACTTTAGTAAAGGCATTGTAGCCAGAGTTTAGAGAATGTGGTAAAACAGATTTCATATctgtaaaaaattttatttacatgtatattttatgtaattggACCAAATGGTTGTAAGAAATTCAAAGTTGTAGAGTTTAAAACTAGTTATTTAGAACATAGACATCTTTTGGGGACCCCACTGGTgcttgctttattttcttttctatttcgactttttttttttttctcattgcatCTCTTGAAGACTCCAAAATAATGAAACTCAACAGctgaatgaaagtgaatgaataAGAAACAGAAACTGACCTCCAAGACGAACTTTTGTTGTTTCGTTGTTCCAGAGACTGTTTTGGACAGGTACAAGACTACCTTTGCTTGCTTCCGTGCGAAGCCTTTTTCATCCAGAACAGGTTTCCTGAACGATTAAAGTATCATCTCGTAGTGTGGTACTGGTTTAAGGGTAGCTTGGTCTAAACGGGCTACCATCCTCTCACAAGTCGCAATATTGCATTTTACCTGAAGATAAGAAAGAAAGGCCCAAACCAACATTAGTTGTACACTCAATAGTGCCTTCATGAATCGTTCATTCCACTCTGGTTTCAGCAGTCGTTCGGATCATTTAAACAAAGTCTgtgtattaaattgtttttaaaactgccagctttccttttaaatttgcattttttctttttttttttttttttttttttttgtataaatcgtctcaaagcatttaaaataaactttac

Function

symbol description
hs2st1b Predicted to enable heparan sulfate 2-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification and heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human HS2ST1 (heparan sulfate 2-O-sulfotransferase 1).

NR:

description
transposase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242737.1 True 2642 mRNA 0.44 7 11734816 11786162

Neighbor

gene id symbol gene type direction distance location
lmo4b lmo4,lmo4b,LOC107593176 coding downstream 26336 11695648 ~ 11708480 (-)
pkn2b zgc:153916,LOC107749976,LOC107662805,LOC107564625,LOC107698884,LOC108413223 coding downstream 253623 11449837 ~ 11481193 (-)
lrrc8c LOC107749978,LOC107593158,LOC107698887,LOC107564627,LOC107675427,LOC107730691 coding downstream 297713 11428874 ~ 11437103 (-)
lrrc8db LOC107749977,LOC107730703,LOC107698886,LOC107564626,LOC107675437,LOC107555394 coding downstream 310023 11415268 ~ 11424793 (-)
znf326 znf326,LOC107749979,LOC107698885,LOC107564631,LOC107555393 coding downstream 320198 11410062 ~ 11414618 (-)
sox14 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676 coding upstream 64096 11850258 ~ 11851231 (-)
trnag-ucc_1 NA coding upstream 186318 11972480 ~ 11972551 (-)
trnap-ugg_4 NA coding upstream 186547 11972709 ~ 11972780 (-)
hdlbpa hdlbp,hdlbpa,LOC107694132,LOC107696756 coding upstream 187303 11973465 ~ 11998495 (-)
stk25a LOC107733254,LOC107593165,LOC107694119,LOC107696758 coding upstream 269730 12055892 ~ 12062418 (-)
G44501 NA non-coding downstream 306053 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 492310 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 492784 11241637 ~ 11242032 (-)
G44457 NA non-coding downstream 495352 11239119 ~ 11239464 (-)
G44452 NA non-coding downstream 496618 11237962 ~ 11238198 (-)
G44705 NA non-coding upstream 363672 12149834 ~ 12437749 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding upstream 737794 12523956 ~ 12525300 (-)
G44737 NA non-coding upstream 809684 12595846 ~ 12965513 (-)
LOC122347051 tmem131,LOC107659030,LOC107692350,LOC107732007,LOC107548642 non-coding upstream 941969 12728131 ~ 12730973 (-)
G44773 NA non-coding upstream 1104554 12890716 ~ 12891336 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 665350 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 749684 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 899291 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 1018075 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 1225813 10434204 ~ 10509003 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 739594 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 1869098 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 1932040 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 2374313 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 3541421 15327583 ~ 15330851 (-)

Expression


Co-expression Network