alg6 (alg6,LOC107704515,LOC107692382,LOC107591199)


Basic Information

Item Value
gene id alg6
gene name alg6,LOC107704515,LOC107692382,LOC107591199
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14789676 ~ 14801854 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242738.1
ACTCCGCCGACGTGTTGTTTCAGGAAGTGGATCTCAGCCGACTCGGCTCTCTAGAAAAGCGCGAGCGATGCTGCAGGCttatgctttttaaatcaaacgTCTCGAAGGCTGCCAGACATGGAGAACTGGAGCCTCGTCTCACTGTGCGTTCTGCTCGCTTTAACGTCGAGGTGGGCGGTGTCTTTTCATTCCTACTCAGGTGCAGGTAAACCGCCAATGTTCGGTGATTATGAAGCACAGAGACACTGGCAAGAAGTGACTTACAATCTACCTGTTCATGAATGGTACTTTAATACTACAAATAATGATCTGAGCTACTGGGGTCTTGATTATCCACCTCTGACGGCATATCACAGTCTGGTCTGTGCGTATGTAGCAAAGCTGCTCAATCCTGAATGGGTGGACTTGCATACGTCCAGAGGCTATGAAAGCCACTCACATAAGCTGTTCATGAGGGCCACGGTTCTTTTTACAGATGTTTTGATCTACATTCCAGCAGTTTTGCTTTACTGTTTCTACTTTTGCGATGGGTCCTCTAAACAAAAGGTTGCCACAGCTTTCTGCATCCTTCTGTATCCAGGACTTATATTGGTTGACTACGGTCATTTTCAATATAACAGTGTGAGCCTTGGTTTGACTCTATGGGGGATTTTGGCACTTGGTTTGGGCTGGGATGTGTTTGGTTCTTTGGCCTTCACTTTGGCTCTCAATTACAAGCAGATGGAACTGTATCACTCACTGCCTTTTTTCTGTTACCTCCTGGGCAAGTGCATCAAGCAGGGCCTGACTGGGAGAGGATTTATTCATTTGGTCAAGATATCGGTGACTGTACTGGTGACCTTTGCCCTCTGCTGGATGCCCTTTTTGTCCGACCCCAAACAACCTCTACAAGTTCTTCATCGCCTTTTTCCTGTTGATCGGGGTTTGTTTGAGGATAAAGTGGCTAACACATGGTGCAGCTTGAATGTGCTGATAAAGATCAAGACCCTGCTGTCCAGAGAGACTCAGCTGTTCCTCAGTTTTGCTCTTACTCTGTTGTTTGTCCTGCCTTCATCTTTGAAATTGTTGTCCAAACCCACTCTGTGGCAGTTTAAGCTTGCCTTGGTGAACACCTCCCTGgcttttttcctcttctccttCCAAGTCCACGAGAAGTCTATCCTTCTAGTAGCCTTGCCAGTTTGCCTTGTAATCAACGAAATACCTCTGATGGCCATTTGGTTTCTACTGACATCAACTTTCAGcaTGCTCCCTCTTCTGCTGAAGGACGGTTTGCTGTTGCCTTACGCGGTGACCTCATTGGCGTTCCTCTTTCTGAGTTTGTATCTGCTCTCCGCTTTAGAGAGAAGTACAGAAGAAGAGCTCAGACTGGGTCTCTATCGCAAACTCGCTCGGCGTTGGCTGCCTAAACTCAACCTCAGCCGGATCATTAAGTGGAAATTCTGGCTTTCCCTGGTGGCCATGGCAGCGTTGAGCTTTACGAGCGTGTGGTTGAAGCCTCCGGCCAAGTTGCCCGATCTGTTTCCGGTGCTGGTCTCCATCCTTTCCTTTCTACACTTTCTGGGCTTCATCATATATTTCAACCTGGTCCAGTTGATGGAGCCACAGaggaaaaagagtcagaagaAAACTAATTGAAATGTGTCTTCAAAGACGTTGGTTGTCAAAAAGAAAGAGCTACAGCCAGGATGACGGTGTAAGGAAAGGACAATCCTTTAGGGCAGAATAGAACAGGATGGGAATAGTTTGTGAAAATTCAATTTCCTCTTAATGAGGTTTAGGGATCTTGCTTGAGTTGAGAAGAGTGAATTCAATGAAGGAGATACAGTTTTGCCAGACTTTCTCTCACTTGTTTGCCTTGGAGACAAATTCGGTTAGTGGGATATTATTGTGTAAATGACCAAACCAGTAAGgccattatttttacatttttgatacaCCATTAAATGGTTTTGCACAAAATTAAA
>XM_043242739.1
TCTCAGCCGACTCGGCTCTCTAGAAAAGCGCGAGCGATGCTGCAGGCttatgctttttaaatcaaacgTCTCGAAGGCTGCCAGACATGGAGAACTGGAGCCTCGTCTCACTGTGCGTTCTGCTCGCTTTAACGTCGAGGTGCAGGTAAACCGCCAATGTTCGGTGATTATGAAGCACAGAGACACTGGCAAGAAGTGACTTACAATCTACCTGTTCATGAATGGTACTTTAATACTACAAATAATGATCTGAGCTACTGGGGTCTTGATTATCCACCTCTGACGGCATATCACAGTCTGGTCTGTGCGTATGTAGCAAAGCTGCTCAATCCTGAATGGGTGGACTTGCATACGTCCAGAGGCTATGAAAGCCACTCACATAAGCTGTTCATGAGGGCCACGGTTCTTTTTACAGATGTTTTGATCTACATTCCAGCAGTTTTGCTTTACTGTTTCTACTTTTGCGATGGGTCCTCTAAACAAAAGGTTGCCACAGCTTTCTGCATCCTTCTGTATCCAGGACTTATATTGGTTGACTACGGTCATTTTCAATATAACAGTGTGAGCCTTGGTTTGACTCTATGGGGGATTTTGGCACTTGGTTTGGGCTGGGATGTGTTTGGTTCTTTGGCCTTCACTTTGGCTCTCAATTACAAGCAGATGGAACTGTATCACTCACTGCCTTTTTTCTGTTACCTCCTGGGCAAGTGCATCAAGCAGGGCCTGACTGGGAGAGGATTTATTCATTTGGTCAAGATATCGGTGACTGTACTGGTGACCTTTGCCCTCTGCTGGATGCCCTTTTTGTCCGACCCCAAACAACCTCTACAAGTTCTTCATCGCCTTTTTCCTGTTGATCGGGGTTTGTTTGAGGATAAAGTGGCTAACACATGGTGCAGCTTGAATGTGCTGATAAAGATCAAGACCCTGCTGTCCAGAGAGACTCAGCTGTTCCTCAGTTTTGCTCTTACTCTGTTGTTTGTCCTGCCTTCATCTTTGAAATTGTTGTCCAAACCCACTCTGTGGCAGTTTAAGCTTGCCTTGGTGAACACCTCCCTGgcttttttcctcttctccttCCAAGTCCACGAGAAGTCTATCCTTCTAGTAGCCTTGCCAGTTTGCCTTGTAATCAACGAAATACCTCTGATGGCCATTTGGTTTCTACTGACATCAACTTTCAGcaTGCTCCCTCTTCTGCTGAAGGACGGTTTGCTGTTGCCTTACGCGGTGACCTCATTGGCGTTCCTCTTTCTGAGTTTGTATCTGCTCTCCGCTTTAGAGAGAAGTACAGAAGAAGAGCTCAGACTGGGTCTCTATCGCAAACTCGCTCGGCGTTGGCTGCCTAAACTCAACCTCAGCCGGATCATTAAGTGGAAATTCTGGCTTTCCCTGGTGGCCATGGCAGCGTTGAGCTTTACGAGCGTGTGGTTGAAGCCTCCGGCCAAGTTGCCCGATCTGTTTCCGGTGCTGGTCTCCATCCTTTCCTTTCTACACTTTCTGGGCTTCATCATATATTTCAACCTGGTCCAGTTGATGGAGCCACAGaggaaaaagagtcagaagaAAACTAATTGAAATGTGTCTTCAAAGACGTTGGTTGTCAAAAAGAAAGAGCTACAGCCAGGATGACGGTGTAAGGAAAGGACAATCCTTTAGGGCAGAATAGAACAGGATGGGAATAGTTTGTGAAAATTCAATTTCCTCTTAATGAGGTTTAGGGATCTTGCTTGAGTTGAGAAGAGTGAATTCAATGAAGGAGATACAGTTTTGCCAGACTTTCTCTCACTTGTTTGCCTTGGAGACAAATTCGGTTAGTGGGATATTATTGTGTAAATGACCAAACCAGTAAGgccattatttttacatttttgatacaCCATTAAATGGTTTTGCACAAAATTAAA

Function

symbol description
alg6 Predicted to enable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ic. Orthologous to human ALG6 (ALG6 alpha-1,3-glucosyltransferase).

NR:

description
dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase

GO: NA

KEGG:

id description
K03848 ALG6; alpha-1,3-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242738.1 True 1967 mRNA 0.46 14 14789676 14801854
XM_043242739.1 False 1907 mRNA 0.45 14 14789676 14801823

Neighbor

gene id symbol gene type direction distance location
efcab7 efcab7,LOC107704512,LOC107731637,LOC107739082,LOC107692381,LOC107591198 coding downstream 8947 14770982 ~ 14780729 (-)
pgm1 pgm1,LOC107731639,LOC107704513,LOC107591179,LOC107739071,LOC107692428 coding downstream 19779 14762711 ~ 14769897 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177,LOC107739155 coding downstream 31724 14657884 ~ 14757952 (-)
cachd1 cachd1,LOC107556548,LOC107692379,LOC107739146 coding downstream 146688 14587270 ~ 14642988 (-)
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding downstream 206675 14523682 ~ 14583001 (-)
foxd3 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 coding upstream 3450 14805304 ~ 14812624 (-)
atg4c atg4c,LOC107704517,LOC107731653,LOC107556554,LOC107591181,LOC107692386 coding upstream 105513 14907367 ~ 14914995 (-)
angptl3 angptl3,LOC107704519,LOC107731634,LOC107556555,LOC107717137,LOC107692388,LOC107591184 coding upstream 122285 14924139 ~ 14929125 (-)
usp1 usp1,LOC107591200,LOC107731620 coding upstream 155175 14957029 ~ 14962572 (-)
mafaa mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 coding upstream 280364 15082218 ~ 15086566 (-)
LOC122346442 NA non-coding downstream 133645 14651716 ~ 14656031 (-)
G45277 NA non-coding downstream 295654 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 510647 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 573400 14214638 ~ 14216276 (-)
G45270 LOC107692440 non-coding downstream 576690 14211366 ~ 14212986 (-)
G45355 NA non-coding upstream 103648 14905502 ~ 14905708 (-)
G45532 NA non-coding upstream 300836 15102690 ~ 15154616 (-)
G45543 NA non-coding upstream 383298 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 431413 15233267 ~ 15745536 (-)
G45560 NA non-coding upstream 517531 15319385 ~ 15320034 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 596510 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1003773 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1108382 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1891958 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3720210 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 525729 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 687264 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 733532 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 802056 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 954455 15756309 ~ 15765107 (-)

Expression


Co-expression Network