LOC122347452 (LOC107692384,LOC107739088)


Basic Information

Item Value
gene id LOC122347452
gene name LOC107692384,LOC107739088
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14780926 ~ 14790192 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242740.1
CAGAGTCCCAGATAAGTGTTTCCGGGGGACTAAATTACTGCAGCACCGCGCCAAGCTACAAAAAACGCCTGTCAACGCCAACgcaagaaaaatataaatatttgaaaatgccTGTGAAGAGAGCCCTTCAGTTACAAGACAAAGAAAATAGCCCAGCGAAGAGGCGAGCACCAAACAGGGACTGTTCCCCTATGACTGGAACCCAGATGACTCCCACGACAAAACCTGCAGCAGGTAGTTCCAGAGCAGGTGGGGAGAAAGCGAATCCCCCTCAAACAAAAGAACCCATGACAGACGCCGAGAGAATTCAGTTTCTCAGGTCTAAGGTGAAAAAATCATTCAAGGACCTCATGAAATACAGGCAACAGCTGGAAACCTTAGTGCCAGTAGAGGGCAGTAGTGAGCTGAGGAGTCTCCTGCTGATGAGTCCTGCTGATCTACAAACTGAACTCAAAAGACATGAGAATCTCTGTGATAAAATTGCATCTTGCGCTCACAGAGCAGACACAGACGAGGGCCATTTCCAAGGGATGAAACAGACTGGCAGCTCTTATGAATATCTGAAGGCAATCTTAAGCCGCTGAGGGATCATTTCTCGATGTTCGACATGGGCAGCAGCTGGTGCCCCTCAAGGTGGATCACGTAACTCTCTCTTTATCACTTCTAGAGGCTGTCTCAAGGACAAAAGCTTAAGCTGACctaacaaaacacacacttgtCACACGCTTTGCATTGCTGCAGTTGAGAAGAACAAGAGCAGCATTTCAGAATTTGGTCTGTTCACCATGGACCGTTAGGCTTCTCGAGAGTTTCAAGATGTGTAATTAAGCACGGCATGACTCGATATCAAGACATGGTTAATATTAGCACCATCCATTAAAATTGTATCACGCACTCCTGTATTGTGACTCGTATATCGAGTAAGGCAGTCAAACCAAAACCTGTTCATTCTctcctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctccgGACCTTGCTCAGGCTGTAACACACTAGCCCCTTTGTGACCTGATAACATTTATAGTtgtaatggattttttttaatggccgTCATTAACTCGCACATAGAGGGGGGAAAAAGATTGCTTGTACTTTTTCCCCTTGGTATTTCAGCTTTACAGCATTATGTTCTGATATGTCTCCTtccatcatttttgttttacagctcGTGAAGTTGAAGCGTTTTAATGCGTAGCTTTAGTACTAGCCTCGTGTCTTCAGTCACCGCCAAGATTATTCCTTtgtattaatgaatatttttccaGATTTACTactggaaagaaaaataaaattattagttCAGTAGTCAA
>XM_043242741.1
CAGAGTCCCAGATAAGTGTTTCCGGGGGACTAAATTACTGCAGCACCGCGCCAAGCTACAAAAAACGCCTGTCAACGCCAACgcaagaaaaatataaatatttgaaaatgccTGTGAAGAGAGCCCTTCAGTTACAAGACAAAGAAAATAGCCCAGCGAAGAGGCGAGCACCAAACAGGGACTGTTCCCCTATGACTGGAACCCAGATGACTCCCACGACAAAACCTGCAGCAGGTAGTTCCAGAGCAGGTGGGGAGAAAGCGAATCCCCCTCAAACAAAAGAACCCATGACAGACGCCGAGAGAATTCAGTTTCTCAGGTCTAAGGTGAAAAAATCATTCAAGGACCTCATGAAATACAGGCAACAGCTGGAAACCTTAGTGCCAGTAGAGGGCAGTAGTGAGCTGAGGAGTCTCCTGCTGATGAGTCCTGCTGATCTACAAACTGAACTCAAAAGACATGAGAATCTCTGTGATAAAATTGCATCTTGCGCTCACAGAGCAGACACAGACGAGGGCCATTTCCAAGGGATGAAACAGACTGGCAGCTCTTATGAATATCTGAAGGCAATCTTAAGCCGCTGAGGGATCATTTCTCGATGTTCGACATGGGCAGCAGCTGGTGCCCCTCAAGGTTGAAATATATGATGAAGCCCAGAAAGTGTAGAAAGGAAAGGATGGAGACCAGCACCGGAAACAGATCGGGCAACTTGGCCGGAGGCTTCAACCACACGCTCGTAAAGCTCAACGCTGCCATGGCCACCAGGG
>XM_043242742.1
CAGAGTCCCAGATAAGTGTTTCCGGGGGACTAAATTACTGCAGCACCGCGCCAAGCTACAAAAAACGCCTGTCAACGCCAACgcaagaaaaatataaatatttgaaaatgccTGTGAAGAGAGCCCTTCAGTTACAAGACAAAGAAAATAGCCCAGCGAAGAGGCGAGCACCAAACAGGGACTGTTCCCCTATGACTGGAACCCAGATGACTCCCACGACAAAACCTGCAGCAGGTAGTTCCAGAGCAGGTGGGGAGAAAGCGAATCCCCCTCAAACAAAAGAACCCATGACAGACGCCGAGAGAATTCAGTTTCTCAGGTCTAAGGTGAAAAAATCATTCAAGGACCTCATGAAATACAGGCAACAGCTGGAAACCTTAGTGCCAGTAGAGGGCAGTAGTGAGCTGAGGAGTCTCCTGCTGATGAGTCCTGCTGATCTACAAACTGAACTCAAAAGACATGAGAATCTCTGTGATAAAATTGCATCTTGCGCTCACAGAGCAGACACAGACGAGGGCCATTTCCAAGGGATGAAACAGACTGGCAGCTCTTATGAATATCTGAAGGCAATCTTAAGCCGCTGAGGGATCATTTCTCGATGTTCGACATGGGCAGCAGCTGGTGCCCCTCAAGctcGTGAAGTTGAAGCGTTTTAATGCGTAGCTTTAGTACTAGCCTCGTGTCTTCAGTCACCGCCAAGATTATTCCTTtgtattaatgaatatttttccaGATTTACTactggaaagaaaaataaaattattagttCAGTAGTCAA
>XM_043242744.1
CAGAGTCCCAGATAAGTGTTTCCGGGGGACTAAATTACTGCAGCACCGCGCCAAGCTACAAAAAACGCCTGTCAACGCCAACgcaagaaaaatataaatatttgaaaatgccTGTGAAGAGAGCCCTTCAGTTACAAGACAAAGAAAATAGCCCAGCGAAGAGGCGAGCACCAAACAGGGACTGTTCCCCTATGACTGGAACCCAGATGACTCCCACGACAAAACCTGCAGGTAGTTCCAGAGCAGGTGGGGAGAAAGCGAATCCCCCTCAAACAAAAGAACCCATGACAGACGCCGAGAGAATTCAGTTTCTCAGGTCTAAGGTGAAAAAATCATTCAAGGACCTCATGAAATACAGGCAACAGCTGGAAACCTTAGTGCCAGTAGAGGGCAGTAGTGAGCTGAGGAGTCTCCTGCTGATGAGTCCTGCTGATCTACAAACTGAACTCAAAAGACATGAGAATCTCTGTGATAAAATTGCATCTTGCGCTCACAGAGCAGACACAGACGAGGGCCATTTCCAAGGGATGAAACAGACTGGCAGCTCTTATGAATATCTGAAGGCAATCTTAAGCCGCTGAGGGATCATTTCTCGATGTTCGACATGGGCAGCAGCTGGTGCCCCTCAAGGTGGATCACGTAACTCTCTCTTTATCACTTCTAGAGGCTGTCTCAAGGACAAAAGCTTAAGCTGACctaacaaaacacacacttgtCACACGCTTTGCATTGCTGCAGTTGAGAAGAACAAGAGCAGCATTTCAGAATTTGGTCTGTTCACCATGGACCGTTAGGCTTCTCGAGAGTTTCAAGATGTGTAATTAAGCACGGCATGACTCGATATCAAGACATGGTTAATATTAGCACCATCCATTAAAATTGTATCACGCACTCCTGTATTGTGACTCGTATATCGAGTAAGGCAGTCAAACCAAAACCTGTTCATTCTctcctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctccgGACCTTGCTCAGGCTGTAACACACTAGCCCCTTTGTGACCTGATAACATTTATAGTtgtaatggattttttttaatggccgTCATTAACTCGCACATAGAGGGGGGAAAAAGATTGCTTGTACTTTTTCCCCTTGGTATTTCAGCTTTACAGCATTATGTTCTGATATGTCTCCTtccatcatttttgttttacagctcGTGAAGTTGAAGCGTTTTAATGCGTAGCTTTAGTACTAGCCTCGTGTCTTCAGTCACCGCCAAGATTATTCCTTtgtattaatgaatatttttccaGATTTACTactggaaagaaaaataaaattattagttCAGTAGTCAA

Function

NR:

description
PREDICTED: centromere protein R-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242740.1 True 1365 mRNA 0.44 9 14780926 14789313
XM_043242741.1 False 767 mRNA 0.49 10 14780926 14790192
XM_043242742.1 False 778 mRNA 0.46 10 14780926 14789313
XM_043242744.1 False 1362 mRNA 0.44 9 14780926 14789313

Neighbor

gene id symbol gene type direction distance location
LOC122347575 NA coding upstream 68575 14708508 ~ 14712351 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding upstream 257610 14495467 ~ 14523316 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding upstream 583607 14192585 ~ 14197319 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding upstream 610840 14133341 ~ 14170086 (+)
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding upstream 659744 14117791 ~ 14121182 (+)
dock7 dock7,LOC107591182 coding downstream 125674 14915866 ~ 14957203 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding downstream 174720 14964912 ~ 15008069 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding downstream 357938 15148130 ~ 15154622 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding downstream 372801 15162993 ~ 15184666 (+)
LOC122346435 wdr78,LOC107590676 coding downstream 543838 15334030 ~ 15340136 (+)
G45312 pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179 non-coding upstream 12944 14766645 ~ 14767982 (+)
G45182 NA non-coding upstream 144245 14586502 ~ 14636681 (+)
LOC122346521 NA non-coding upstream 286893 14491806 ~ 14494033 (+)
G45131 NA non-coding upstream 377989 14402508 ~ 14402937 (+)
G45127 pde4b,LOC107659050,LOC107739135,LOC107590663,LOC107591166 non-coding upstream 408832 14371274 ~ 14372094 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding downstream 15113 14805305 ~ 14813679 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding downstream 220054 15010246 ~ 15086529 (+)
G45371 NA non-coding downstream 309645 15099837 ~ 15114651 (+)
LOC122347325 NA non-coding downstream 440629 15230821 ~ 15231746 (+)
LOC122347324 NA non-coding downstream 441632 15231824 ~ 15233054 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 800640 13972173 ~ 13980286 (+)
G44887 NA other upstream 1371014 13394229 ~ 13409912 (+)
G44645 NA other upstream 1671560 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1698807 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1975226 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 445973 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 568669 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 774789 15564981 ~ 15566668 (+)
G45894 NA other downstream 2396516 17186708 ~ 17187308 (+)
G46022 NA other downstream 3204999 17995191 ~ 17996717 (+)

Expression


Co-expression Network