XLOC_000701 (acta1a)


Basic Information

Item Value
gene id XLOC_000701
gene name acta1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 53945934 ~ 53953532 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001172
TAAAAGCAGAGGACgggtttgtgtatatatatatgtgatgaAGGTTTAAGCAGGTCACTGTGTGTAGCGGGAGCGCTTCAGCTTTACTTCAGGACTCACGAGAACGAGCAGAGGCAGAACCCATCAAGATGTGTGACGATGATGAGACCACAGCTTTGGTGTGCGACAACGGATCAGGCCTGGTCAAGGCTGGTTTCGCCGGAGATGACGCCCCTAGAGCCGTCTTCCCATCCATTGTCGGCCGCCCGCGTCACCAGGGTGTGATGGTTGGTATGGGTCAGAAAGACTCCTACGTTGGAGACGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCATGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGCGTGGCCCCTGAGGAGCACCCAACACTGCTCACAGAGGCCCCACTCAACCCCAAGGCTAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCTATGTATGTGGCCATCCAGGCTGTCCTGTCCCTCTACGCCTCTGGCCGTACCACCGGTATTGTGCTAGACTCTGGTGATGGTGTGACCCACAATGTGCCTATCTATGAGGGTTACGCTCTTCCTCATGCCATCATGCGTTTGGACTTGGCTGGTCGTGATCTGACAGACTACCTGATGAAGATCCTGACTGAGCGTGGATACTCTTTCGTCACAACTGCTGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTTGCCCTGGACTTTGAGAATGAGATGGCCACAGCCGCCTCCTCATCCTCCCTCGAAAAGAGCTACGAGCTTCCTGACGGTCAGGTCATCACCATTGGTAATGAGCGTTTCCGTTGCCCTGAGACCCTCTTCCAGCCTTCCTTCATTGGTATGGAGTCTGCTGGCATTCACGAGACCACTTACAACAGCATCATGAAGTGCGACATTGACATCAGAAAGGACCTTTACGCCAACAATGTACTCTCCGGTGGTACCACGATGTACCCTGGTATTGCTGACCGCATGCAGAAGGAAATCACAGCTTTGGCTCCAAGCACAATGAAGATTAAGATCATTGCTCCCCCTGAGCGCAAATACTCAGTCTGGATCGGCGGGTCCATCCTGGCTTCTCTGTCCACTTTCCAGCAGATGTGGATCACCAAGCAGGAATACGACGAGGCCGGCCCTAGCATCGTGCACCGCAAATGCTTCTAATCACACGATTCAACATCCTATCATTGCCTCCTGCTCAGGAATTAATCATCGATTCCTTGCTCCTGTGGACAGATTTACTACAGCGATGACATAGGGGCGAGCTTTAAAagcataaactgaaaaaaagacacTAGCATCAAGGGACAGCAGAAATACCAAGCGCTCTCATTGCACACAACTGTATTTATTACTGACTTCCATGGCTTGGTATTTTGGTGGATGCTGTTTAAAAGAAACGACAAGGACTCCAGCTCCCTAATAGATTCCAGTGCCATACGTTCCACTGTACACTGATGACCAACACTAATCTCACTTCAACAGACAAATAAAACTGAACatgtatttttaaa
>TCONS_00001173
GCGGGAGCGCTTCAGCTTTACTTCAGGACTCACGAGAACGAGCAGAGGCAGAACCCATCAAGATGTGTGACGATGATGAGACCACAGCTTTGGTGTGCGACAACGGATCAGGCCTGGTCAAGGCTGGTTTCGCCGGAGATGACGCCCCTAGAGCCGTCTTCCCATCCATTGTCGGCCGCCCGCGTCACCAGGTAAAAtcctgaaatatgaaataaaggtctcgtgaagtgctttgaaatgtgcaattttaaTTCGATGTTTGACATAGACttaactgaaaaatgaagagagtGCAGGGCAAAGAgttgctcctcccctttttaaaaagcagccaatagcattttgtttttctcacagctctgccagtgagagtagttgagctcaagcgcattaaatgaaaagcaaataagaagtgtcttgaagatgGGTCAGATGATTTAATGAGAGTTAATGAGATTTattgagaaactgaagtatgaggtgatgtcaaaaaaaTCACCTATCCatttagtccaggggtgtccacactcggtcctgaagggccggtgtcctggaga

Function

symbol description
acta1a Acts upstream of or within skeletal muscle fiber development. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including adaxial cell; fin; musculature system; pericardial region; and trunk. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle).

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0090131 mesenchyme migration biological_process
GO:0030175 filopodium cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005869 dynactin complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0044297 cell body cellular_component
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-267 Acts upstream of or within skeletal muscle fiber development. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including adaxial cell; fin; musculature system; pericardial region; and trunk. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle).

Ensembl:

ensembl_id ENSDARG00000036371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001172 False 1612 mRNA 0.51 7 53945934 53953532
TCONS_00001173 True 557 lncRNA 0.46 2 53946000 53948508

Neighbor

gene id symbol gene type direction distance location
XLOC_000700 nup133 coding upstream 4028 53919110 ~ 53941906 (+)
XLOC_000699 NA coding upstream 80097 53864528 ~ 53865837 (+)
XLOC_000698 ifngr1 coding upstream 82626 53842344 ~ 53863308 (+)
XLOC_000697 NA coding upstream 175195 53760797 ~ 53770739 (+)
XLOC_000696 pus10 coding upstream 215398 53714734 ~ 53730536 (+)
XLOC_000702 ccsapa coding downstream 698 53954230 ~ 53963933 (+)
XLOC_000703 NA coding downstream 29082 53982614 ~ 53988776 (+)
XLOC_000704 dla coding downstream 59925 54013457 ~ 54026352 (+)
XLOC_000705 triobpa coding downstream 83545 54037077 ~ 54062112 (+)
XLOC_000706 dcaf15 coding downstream 115918 54069450 ~ 54084665 (+)
XLOC_000695 NA non-coding upstream 250379 53688977 ~ 53695555 (+)
XLOC_000694 NA non-coding upstream 287645 53656231 ~ 53658289 (+)
XLOC_000692 NA non-coding upstream 435311 53508505 ~ 53510623 (+)
XLOC_000710 CABZ01067150.1 non-coding downstream 232507 54186039 ~ 54186156 (+)
XLOC_000712 NA non-coding downstream 323711 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding downstream 448401 54401933 ~ 54404147 (+)
XLOC_000715 NA non-coding downstream 658306 54611838 ~ 54613479 (+)

Expression


Co-expression Network