rpl5b (rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809)


Basic Information

Item Value
gene id rpl5b
gene name rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13536511 ~ 13542567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242778.1
TGTGCTTTCCTCCACTCAGTGTTGTTTTGCCCCGTTATTTACCACGCATGCGCAcatcattctttctttttcccgTGCAGCGGAGTCAAAACTCCCAAGTTTGACTCCAGGCTCCGGCTTAGGAGACTGAAAAAGTCCGCAAAATGGGATTCGTTAAGGTAGTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTGAAGTTCAGGAGAAGGAGAGAGGGGAAAACTGATTACTTTGCCCGGAAGCGCCTTGTTATCCAAGACAAGAATAAGTACAACACACCCAAGTATAGGATGATCGTCCGCTTCTCCAACAGGGACATCATCTGCCAGATCGCCTATGCCAAGATCGAGGGTGACATGATTGTGTGTGCGGCCTACTCCCATGAGCTGCCCAAGTACGGCATCAGTGTGGGTTTGACAAATTATGCTGCAGCCTACTGCACCGGGCTGCTGCTGGCCCGCAGGCTGCTGAACAAATTTGGCCTTGACAAGGTGTATGAGGGTCAGGTGGAGATCACTGGGGATGAGTTTAATGTGGAGAGCATTGATGGACAGCCAGGAGCTTTCACCTGCTACCTGGATGCAGGCCTGGCCCGAACCACCACTGGAAACAAGGTGTTCGGTGCCCTGAAGGGAGCGGTGGATGGAGGTCTTTCCATTCCTCACAGCACCAAACGTTTCCCTGGCTATGACGCTGAGAGCAAGGAGTTCAATGCAGAGGTTCACCGCAAGCACATCCTGGGCCTGAACGTCTCTGAATACATGAGATACTTGAtggaagaggatgaggaagcCTACAAGAAACAGTTCTCTCGCTTCATCAAGAACAGCGTTACCCCTGATTCCATGgaggaaatgtataaaaaggCACACGCAGCCATCCGGGAGAACCCAGTGCATGAAAAGAAGCCCAAGCGGGAGGTCAAGAAGAAGAGATGGAACCGTGCCAAGCTCACACTGGCTCAGAGAAAAGACCGTGTTGCCCAGAAGAAGGCCAGCTTCCTTCGGGCTCAAGCTGCAGAGGAGGACTAGAGCTTGCTTTTCTCCTCATTTGTGCAGAGATCGTTTgttctaataaatatataaaaaaaga

Function

symbol description
rpl5b Predicted to enable 5S rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma. Orthologous to human RPL5 (ribosomal protein L5).
rpl5 Enables RNA binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. A structural constituent of ribosome. Involved in several processes, including protein stabilization; regulation of cellular protein metabolic process; and ribosome biogenesis. Located in cytosolic ribosome; endoplasmic reticulum; and nuclear lumen. Part of ribonucleoprotein complex. Implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma.

NR:

description
PREDICTED: 60S ribosomal protein L5, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0008097 5S rRNA binding molecular_function

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242778.1 True 1095 mRNA 0.51 8 13536511 13542567

Neighbor

gene id symbol gene type direction distance location
LOC122347353 LOC107731845,LOC107659022,LOC107692422 coding upstream 64578 13469404 ~ 13471933 (+)
tp63 tp63,LOC107574491,LOC107590651,LOC107659018,LOC107752631,LOC107696778 coding upstream 145860 13350521 ~ 13390651 (+)
tprg1 tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662 coding upstream 202937 13314057 ~ 13333574 (+)
LOC122346939 lpp,LOC107684332,LOC107590653,LOC107717931,LOC107696776,LOC107752632,LOC107552245,LOC108427685 coding upstream 257331 13119195 ~ 13279180 (+)
inpp5d LOC107694111,LOC107590654,LOC107717933,LOC107696774,LOC107552268,LOC107752650 coding upstream 456465 13065838 ~ 13080046 (+)
atp1b1a NA coding downstream 55972 13598539 ~ 13607514 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding downstream 96427 13638994 ~ 13644273 (+)
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding downstream 109829 13652396 ~ 13655156 (+)
actl6a actl6a,LOC107659031 coding downstream 141862 13684429 ~ 13690950 (+)
ndufb5 LOC107659010,LOC107709185,LOC107590679,LOC107578042 coding downstream 150810 13693377 ~ 13696789 (+)
G44899 NA non-coding upstream 118671 13417558 ~ 13417840 (+)
G44898 NA non-coding upstream 119539 13416759 ~ 13416972 (+)
G44890 NA non-coding upstream 136963 13399022 ~ 13399548 (+)
G44886 NA non-coding upstream 178523 13357403 ~ 13357988 (+)
G44885 NA non-coding upstream 179887 13356269 ~ 13356624 (+)
LOC122346508 NA non-coding downstream 47318 13589885 ~ 13594601 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding downstream 107548 13650115 ~ 13650883 (+)
LOC122346715 NA non-coding downstream 113625 13656192 ~ 13657766 (+)
G44998 LOC102783117 non-coding downstream 119245 13661812 ~ 13662097 (+)
G45056 NA non-coding downstream 294040 13836607 ~ 13836819 (+)
G44887 NA other upstream 126599 13394229 ~ 13409912 (+)
G44645 NA other upstream 427145 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 454392 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 730811 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1009554 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 429606 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1693598 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1816294 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 2022414 15564981 ~ 15566668 (+)
G45894 NA other downstream 3644141 17186708 ~ 17187308 (+)

Expression


Co-expression Network