LOC122347482 (tsfm,LOC107711018,LOC107585120)


Basic Information

Item Value
gene id LOC122347482
gene name tsfm,LOC107711018,LOC107585120
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15695626 ~ 15697839 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242828.1
TCTTGAGTTGTCTTCTGTTCGacctttccctctctctgtaGAAAACGTGCTTCAATGACATTCCAGTTACTGATGTAAGGAGTCTAGCGTTAGTCCTGAGGAAGATATAGAAATGTCTTTATACTCTTTATTTCGAGCTGTCAGGACAGAAGTAGTCAAGGGATGTCTCACTCAGCACGTTCAGTCTCTCTACACCAGCTGCCCGAGTTTAGCAGCAGATAAAGCACTTCTCCTCAAATTACGTAAATCTACGGGCTACACCTTTATCAACTGCAAAAAGGCCCTGGAGAAATCCAACAATGACATTACAGAGGCAGAAACCTGGCTGCACGAACAAGCCAAAAAAGAGGGCTGGAGTAAAGCGAATAAACTGGAAGGTCGAAAAGCCAAGGAAGGGCTGATTGGTCTCCTTATGGGCGACAATGCAGCGGTCATGGTTGAGgtgaactgtgaGACAGATTTTGTGGCGAGGAATGAGAAATTCCAGCAGTTGGTGAAGGATGTTGCTTTGTCTGTAATGGCTCATAACagcagcaaaaaacaaaaaacagggtATATGAAGAGTGTGCTGTCTTCTGAGGATATTAATAAGCTCGATGTTCCTGAGGCCTCACTGGCAGATCAGGTGGCCTTGACTGTAGGGCGGTTAGGTGAGAACATTGGCGTGCGGCGGGCCGTCTCACTTGCTGTGCCCTCTGATTGGTACATCGGCTCATACATTCATGGGGCAGTTACCGAGCAGGTTGGCTTTGAGATGGGGCGCTATGGATCGCTAGTTGTGTTTCAAGGTGGACCAAAGGATGGGACAGACACTCTGGGAAGGAAGTTGGGGCAACATATAGTGGGTGAAGCACCCGTTTCTCTTGGCAACATGGACGATACACCATGTGGTGAAGCTGAGACAAGACTTTTGCCCCAGACCTTCCTCCTAGATCCTAAATATACTGTGGGACAGTTCCTGACTCTACAGAACGCACGTGTGCTAGACTTCATACGCTTCCAGTGTGGAGAGAGCACCAGTCAGGAGGAGTGAACAGTTCTGTTTCGAATGAGAAAAAATGTCTCCttaaagcagtggttctcagAC

Function

symbol description
tsfm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 3. Orthologous to human TSFM (Ts translation elongation factor, mitochondrial).

NR:

description
PREDICTED: elongation factor Ts, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02357 tsf, TSFM; elongation factor Ts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242828.1 True 1087 mRNA 0.48 7 15695626 15697839

Neighbor

gene id symbol gene type direction distance location
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding upstream 4592 15683566 ~ 15691034 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding upstream 38438 15646020 ~ 15657188 (+)
LOC122346435 wdr78,LOC107590676 coding upstream 355490 15334030 ~ 15340136 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 510960 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 541004 15148130 ~ 15154622 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 48235 15746074 ~ 15753735 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 116083 15813922 ~ 15941551 (+)
LOC122347284 mast4,LOC107740425,LOC107684348,LOC108437187,LOC107730326,LOC107681051 coding downstream 376621 16074460 ~ 16104862 (+)
LOC122347577 tmem69,LOC107731626,LOC107684288,LOC107594642,LOC107725194,LOC107692399,LOC107579605 coding downstream 384497 16082336 ~ 16083207 (+)
LOC122347576 mast2,LOC107731624 coding downstream 386470 16084309 ~ 16090289 (+)
G45459 LOC107711016,LOC107673510,LOC107748416 non-coding upstream 50500 15644034 ~ 15645126 (+)
G45470 uroc1 non-coding upstream 57102 15637946 ~ 15638524 (+)
G45456 NA non-coding upstream 112220 15580262 ~ 15583406 (+)
G45447 NA non-coding upstream 118591 15510740 ~ 15577035 (+)
G45421 NA non-coding upstream 207734 15486374 ~ 15487892 (+)
LOC122346530 NA non-coding downstream 106449 15804288 ~ 15805565 (+)
G45635 NA non-coding downstream 190918 15888757 ~ 16117279 (+)
G45643 NA non-coding downstream 454343 16152182 ~ 16155761 (+)
G45684 NA non-coding downstream 597692 16295531 ~ 16298954 (+)
G45794 mier1,LOC107551013,LOC107758364,LOC107724131 non-coding downstream 866115 16563954 ~ 16565233 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 128958 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 236240 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 451346 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1715340 13972173 ~ 13980286 (+)
G44887 NA other upstream 2285714 13394229 ~ 13409912 (+)
G45894 NA other downstream 1488869 17186708 ~ 17187308 (+)
G46022 NA other downstream 2297352 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2458816 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 2879339 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 3564745 19262584 ~ 19347629 (+)

Expression


Co-expression Network