cav3 (cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475)


Basic Information

Item Value
gene id cav3
gene name cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20782444 ~ 20786555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242842.1
GGGTGAGACAGTCagtgtgagcgagagagagagacaggagccCGGGCCGGCGCAGCTGTCCCTAGCATTCCAGGCGTGTCGTCAGTCCACAGATTGGAGAATCAAAAGGGACTAGGGGCCATTCTGACACTTTTCCTTTGGTAGTTGACTTAGTTTGCTTTAGTCCTTTTCCTTTGGACACTTCTGCTTTACATCTATCCCACTCCGACCAGTTTTGGGCCAGAGGCCCCCAATATGGCGGACCAGTATAACACCAACGAGGAGAAAATCGTGAAAGACAGTCACACCAAGGAGATTGATTTGATCAACAGGGACCCTAAGCAAATCAATGAAGATGTTGTGAAgGTGGATTTTGAGGATGTGATAGCTGAGCCCGATGGCACCCACAGCATGGATGGAGTGTGGAAGGCCAGCTACACCACCTTCACCGTCTCCAAGTACTGGTGCTACCGTGTGCTGTCGGCCATCTTTGGCATCCCCGTGGCGCTGCTGTGGGGCTTCTGCTTTGCCTGCATCTCCTTCTGTCACATTTGGGCAGTCATGCCCTGCATTAAGAGCTATCTGATCGAGACCCAGTGCCTGAGTCGAATCTACTCTCTCTGCATCCACACCTTCTGTGACCCCTTGTTCGAAGCTCTAGGGAAAATCTTCAGCAGCGTACGGGTGGCGTTACGCAAAGAGGTTTAGATTTATAAGACAAGTCAAGGTTTACATGTTCAGTCCTTggaggaaaatgttttattttaccattatcTATTATTGGAGTGTGGATTTTGAGatccttaaaaatgaaaagactaCACGAATAAAAGAATGCCCAGGGATGGTTAATCCTATGCAGTGTTTTTTATGTTCTCAGTTTATGTTAGAGGCTTTGGGAGCAATTCAGGATTAGGCCACCTGCTTTTTCAGAGAGACGTATGATGAAAGGCCTCTATTACAGACACTGGAGAATAAGTCTTATATATCATGTGGTTTCTCTCTTCGACAGATTTAAAATGGGATGTTGCTGAGTGTGGTATTTTTATCATGACAATGTCAGATATATTCTGTACAACTACTAATTAAAAagttaagtaaaaataataatggtttgaattgtttattataaatatatatttcctttttttactcttttccTACCCTATACAACAATTAAACACAGAAATTTTATTTCCCTCAGTGggacactgaaaacatttaacGTCTTTAAACTGAAGCCATGAATTTGCaatgaaatatgttttcatgAACATATTTCATCAAATTTTCCCTTTTCCCTTAATAAATACCAAATGGTTCAgctgggaaaaaataaataaataaataaataaattatgacttTGCAATTTGATCTATTTGCTTTCAGCTGCTCACTTTAGTTGGCTTATTATTCTccacttttcaaaacatttagtcACAGTTCGACATATCAGCAcacaatttatttcaataaataaaagctacagCTACACATAGTGAATGTAAATAGGCAGTATATTTTCcaggaggaaaaaaatcagTAGCTTTTGAAATAAGAAAGTAACAAGCATTTCAGTGAATAGTATATTTAAaccttataaaataaatatttcctgcTGTTAATAGCTACTGCCTTTATCATTGTCTTTATCCTTCTCATTTCGCAGCACTCATAAACAATTGTACGAAATTCACTTTTCCTCTTGTACACATATTTTCTTTAGAGTATTTTATAAAGATGAAGCTACAAACATAGGCAAcatgaaatcatgtttttagaGCGATATTAAGCAAAATATGTAACTGGAATAAACACTTTAATCTCATTGAACAAACACTCCGTCTTACAGGAAAACAACCATAAAAGTGAAGGAGTAAACAATCAGTCctttgcattttgaaaacaaaccaGGTGTTTGCCATGTTTGATTACCATGATGCACTGCAGAAACATTTTGCAAAGAGATGTGGTCCTTTGGGCATGACAGTAAAGTTTACACGTAAAATGATAAAGACCATACAGTGATAACAACATAATCATGTATGTGCCAAAAATGAAAGTGCTctgttttcttaaaacaaacaaaagtactCTCTTTTGACAAGTCAGGTTCATTAAAAAGAGCAACTGGCCATGTTTCTCATTAGCTTTCAGAAGAAACACTTCATGTGTCATCAACATCTTGTTTTCATCTGTGTGTTGTTAACCTCCTCGTCTCGAACCCATATGCGAACTGTTTTGTGTTGAGTGACAATTGCTTCCTCATAACCCATAAAATTATATAACCTGCTGTCATCTTCAATTCAATGTATGTCAAACTTGATTTTTCACAATAAGCAGTGACGATCCGATTACCTCTCACTGCCGTCTTCATGAAGGTACGGAGGCATGagtactgtaaataataaaagtttcatttttggatgaactatc

Function

symbol description
cav3 Predicted to enable connexin binding activity; molecular adaptor activity; and transmembrane transporter binding activity. Acts upstream of or within muscle cell fate commitment; notochord cell development; and striated muscle cell differentiation. Located in sarcolemma. Is expressed in several structures, including adaxial cell; heart; musculature system; notochord; and pectoral fin. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); isolated elevated serum creatine phosphokinase levels; and muscle tissue disease (multiple). Orthologous to human CAV3 (caveolin 3).

NR:

description
PREDICTED: caveolin-3

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0007520 myoblast fusion biological_process
GO:0045214 sarcomere organization biological_process
GO:0060035 notochord cell development biological_process
GO:0042383 sarcolemma cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG:

id description
K12959 CAV3; caveolin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242842.1 True 2416 mRNA 0.38 2 20782444 20786555

Neighbor

gene id symbol gene type direction distance location
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding downstream 351267 20423711 ~ 20431177 (-)
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding downstream 543784 20237274 ~ 20238660 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 657183 20116875 ~ 20125261 (-)
rab44 NA coding downstream 686927 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 708947 20070910 ~ 20073497 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 8691 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 13539 20800094 ~ 20805651 (-)
grm2a grm2a,grm2,LOC107673619,LOC107657935,LOC107567094,LOC107749615,LOC107750271,LOC107584497 coding upstream 20208 20806763 ~ 20841391 (-)
tex264a tex264a,LOC107584457,LOC107749613,LOC107673607,LOC107750253,LOC107657929,LOC107567068 coding upstream 56301 20842856 ~ 20900191 (-)
fancd2 fancd2,LOC107750252,LOC107749611,LOC107573736,LOC107584458,LOC107666962,LOC107673444 coding upstream 113814 20900369 ~ 20915278 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding downstream 75595 20564351 ~ 20706849 (-)
G46922 NA non-coding downstream 90281 20498222 ~ 20692163 (-)
G46929 srgap3,LOC107657972,LOC107750258 non-coding downstream 183309 20554033 ~ 20599135 (-)
G46883 LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261 non-coding downstream 359714 20419765 ~ 20422730 (-)
G46881 twf2,wdr82,LOC107712117,LOC107673495,LOC107750262,LOC107567090 non-coding downstream 362849 20360821 ~ 20419595 (-)
G47004 NA non-coding upstream 148867 20935422 ~ 20935654 (-)
LOC122347045 gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988 non-coding upstream 350918 21137473 ~ 21142766 (-)
G47122 zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032 non-coding upstream 541877 21328432 ~ 21329671 (-)
G47262 LOC107573738,LOC107657877,LOC107713495,LOC107666997,LOC107750247,LOC108436274 non-coding upstream 815734 21602289 ~ 21663492 (-)
G47283 NA non-coding upstream 1013723 21800278 ~ 21801032 (-)
G46926 NA other downstream 250610 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 616165 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 679985 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 781806 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 825714 19899672 ~ 19956730 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 562064 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 1953417 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2335228 23121783 ~ 23163157 (-)
G47590 NA other upstream 2612794 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 2866634 23653189 ~ 23656456 (-)

Expression


Co-expression Network