cachd1 (cachd1,LOC107556548,LOC107692379,LOC107739146)


Basic Information

Item Value
gene id cachd1
gene name cachd1,LOC107556548,LOC107692379,LOC107739146
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14587270 ~ 14642988 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242887.1
ccggctcacacacacacacacacacacacgttcactcacacactcactttaCCCAGCGCCAACAGCCAAAGAAACTAATGTTGCCCTCTTTACCAGCGTTTGAGTTTTTAAAACTATGCCTTGACGCAATCGATCGACCCCGCTGGAGTTCGGAAAGTGGGAGAAGTGAAAAGGGAAAGTTGTGAAGTAATCGGTGAAGTTTTTCGCTGTTGCCGTGCAGGAGCGCATCGAGCCGTAATGGCGAGCCGCGCGCGGACGGGATCTCGAGTCTCTCTCGCGGCGTGGAGCAAACGCTCCCGATCACGCTGGAATAACCTGGAGATTTCAAAGTGGAGCGTAGTCGCCTTGTTGCTGGTTGTTTGCGGTGGATTTTGTGGCGCGGATAGTGAGTTTTCGATCCTGGAAGAGGCTCAAGTTTTGGCAGTGCAGATGAAGAAGCTGTCTACTCAGGAGCTGGGTGTTCTCACCATGCAGAGAATCTTCAACTCCTTTGTGTACACGGAGAAGACTTCAAATGGTGAAACAGAGGTGCAGCAGcTAGCAAAAAAGATCCGTGAGAAGTTTAACCGGTATCTGGATGTGGTGAACAGGAACAAGCAGGTGGTGGAAGCGTCTTACACAGCCCACCTCACATCCCCCCTCACAGCCATCCAGGACTGCTGCACCATCCCTCCCTCCATGATGGAATTTGATGGTAATTTTAACACCAATGTTTCGAAGACCATCAGCTGTGATCGTCTCTCCCCTACCGTCAATAGTCGAGCTTTCAACCCAGGACGAGACCTCAACTCTGTGCTGGCAGACAACCTGAAGTCCAATCCAGGGATCAAGTGGCAGTACTTCAGCTCAGAGGAGGGTATTTTCACCGTGTTTCCTGCTCACAAGTTTCACTGCAAGGGCACATACGAGCACAGGAGCAGGCCTGTGTATGTTTCGGCAGTAAGGCCGCAGTCGAAGCACATTGTAGTGATCATAGACCATGGGGCCTCCGTCACTGAGACCCAACTCCAGATCGCCCGTGATGCTGCCCTAATCATTCTCAACTCCATCGACGAGCACGATAAAatctCAGTGTTGACAATAGCAGATACTGTTCGTTCCTGCTCTCTGGATCAGTGCTACAAGAGCTTCCTCTCACCTGCTACCAGCGAGACTAAGAGGAAGATGAGCACCTTCATCAACAACGTTAAAGCGTCTGACAGCTctacccagcatgcactgggcTTCCAGAAAGCCTTTCAGTTGTTGAGGAACACAAGCAACGTCACCAGACAGCCGACTAACACCGACATGGTGATAATCTACCTGTCATCAGGCGTCACCACACGAGACTCATCCGAGCACGAAAAGAGAGCAACCCTGAGCGTGGTCAAAGAGGAGAACCGCCACCTCAACAACTCTGTCATGATCCTCACCTACGCTCTCATGAACGAAGGAATAACGGGACTTAAGGAGCTGGCCTTCTTGCGAGACCTGGCTGAGCAGAACTCTGTTAAGTACGGCGTTCCGGATCGTTCCGCCCTGCCTGTCGTGAAGGGCAGTATGATGGTTTTAAACCAGCTCAGTAACCTGGAGACCACCGTGGGCCGCTTTTACATCAACCTCCCCAATCGAATGATCGACGTGGCCTCCTTCAGCTTGCCTTATGCGGACCAGATGGGAGACGGTTTCATCATGACCGTCAGCCGGCCGTGCTACTTTGGGAACTTGTTGCTGGGTGTAGTTGGAGTGGACGTGAATCTTGCTTACATACTGGAGGATGTCACCTACTACCAGGACTCCCTGGCCTCGTATACATTCCTCATAGACAATAAAGGCTACACCCTCATGCATCCGTCACTCACCCGTCCTTACCTGATGACTGAAGCTCCCCTTCATACAGACATCATTCACTACGAGAACATCCCAGGGTTTGCTGCTGTGCGTCAAAATATCCTCAGTCTGCCTCTGGGGAGTCAGGTCATCGCTGTGCCTGTCAACTCCTCTCTGTCTTGGCACATGAACCGCCTGCGTGATCCCAGTCGAGATGCCTACAACGTCAGCTACGCTTGGAAACTGGTTCAGGACACTTCATTTATATTGTGCATAGTTTATGTTCAGCCGGAGATCCCAGTGAAGCAACTGAAAAATATGAACACAGCCCCTAGCAGCAAACTCCTGTACCACCGCCTGGATCTGCTGGGGCAGCCCAGTTCCTGCCTTCACTTTAAACAGCTCGCTACAGTCGAGAGTCCCACAGTGATGTTGTCTGCTGGTAGTTTCTCCTCTCCATATGAGCACTTGAGTCAGCCAGAAACCAAGCGCATGGTGGAGCACTACACAGCCTACCTGAGTGACAACACTCGGCTCATAGCCAACCCGGGCCTGAAGTCTTCTGTGAGGAATGAGGTGATGGCCACCAGTCACGTGACAGATGAATGGATGAGTCTTATGGAGATGAGCAGCCTCAACTGCTACATTGTGAGGCGTTACATAGCAACGCCCAATGGGGTGCTGCGGATTTACCCCGGTTCTCTCATGGACAAAGCCTTCGATCCCACCAGGAGGCAATGgTACCTACATGCTGTAGCCAATCCTGGTCTCATCACTTTTACTGGACCTTACCTTGATGTTGGAGGGGCGGGTTACGTGGTCACTATTAGCCACACCATCCATGCCTCTAGTTCTCAAAAGGCCTCTGGTTACACGGTGGCGGTTATGGGCATTGATTTCACTCTACGCTACTTCTACAAAGTTCTGTTGGATCTGCTGCCCATCTGCAACCAGGACAAGGGCAACAAAATCCGGTGTTTTATCATGGAGGACAGAGGCTATCTGGTGGCCCATCCGACCCTGATTGACCCGAAGGGCCACGCTCCAGCAGAACAGCAACATATCACTCATAAGGAGCCTCTGGTGGCCAACGACATTCTCAACCACCCCAACTTTGTGAAGAAGAACCTGTGTAACAGTTTCAGTGATCGTACCGTGCAGCGTTTCTACAAGTTTAACACCAGCATTGTCGGTGATCTGACAAACCTTGTGCACGGCAGTCACTGCTCAAAATACCGGCTCACCCGTATCCCAGGAACCAATGCGTTTGCTGGTATTGTGAATGAGACCTGTGATTCTCTGGCTTTCTGTGCCTGCAGTACTGTGGATCGTCTCTGTCTTAACTGCCACAGAATGGAGCAGAATGAATGCGAGTGCCCCTGCGAATGCCCTCTAGAGGTGAATGAATGTACTGGCAACCTCACCAACGCAGAGAACAGaaatcCGAGCTGTGACGTGCACCAAGAGCCTTTGTCTTTGACTGTAATTGAACCCAGTCTACAGGACACTCTGCCTCAGTGCATCAACACCAGATGCAGCCAGCGCTTCACCAGCAGTGACTGTTTCGGTGTTCTGGACTGTGAGTGGTGTATGGTGGACAGTGACGGAAAGACCCATCTGGATAAGCCTTACTGTGCCCTACAGAAGGAATGCTTTGGAGGGATAGTGGGTGCCAAGAGTCCTTATGTGGATGGACTGGGCATTTTAGATGAGGAGTTGGCCTCGCTGAATATGATCAAAAGTGCGCCCGTGGGGCCAGTGGCAGGAGGGATTATGGGATGCATCATGGTGCTGGTGTTGGCTGTGTATGCCTACAGGCACCAGATCCACCGCCGCAGCCATCAGCACATGTCCCCGCTGGCCGCGCAGGAGATGTCTGTCCGAATGTCCAACCTGGACAACGAACGAGATGACAGAGATGAAGACAGTCACGAAGACAGAGGAATAAtaaGTAACACTCGATTCATTGCTGCTGTTATTGAgaggcacacacacagcccAGAACGACGGCGGAGATACTGGGGCCGGTCAGGGACAGAAAGTGACCATGGTTACAGCACCATGAGCCCTCAGGAGGACAGCGAGAACCCCCCCTGCAACAACGATCCTCTCTCAGCAGGCGTGGATGTGGGCAATCACGACGAGGACCTCGACCTGGACACACCTCCACAGACAGCCGCTCTCCTCAGCCATAAGTTCCACCCGTATCGGCACCCCCACACGCACCACCCCCTGCACCTGCACACGCATCATCTCCAGGCTGCCGTCACCGTGCACAGCGTGGATGCCGAGTGCTGATCCCGCCCACCCGTGACCCCAAACCACCCGCCGGCCCTGCCTTCAATGCCACTGCTAACTTCATCCACCACCTCCATTCAGGCCCTGCATCCTGCAAAGACAAGGAGAGAACCTTAACTCCCCAAGTATCCCTGGGCAGCCGCTgaggtgttttgtgtttgtagaGCATTGGTGAACATTTGACCTCTGTAGAGGTCATTAGGGAGTGGATTTGGCAGGTTCATAACGATACAAAGCTccttatgtttttttgttttttttcgagAAACAATGAAGATGAAAGGATTATTTTTctactatttatttaacagGAGTGGAGGTGGAGCTCGTGAacggaaaaaaatatataattgactGACTGATTGAATTTGTCAGCTTTCTATTAGGCCCATA

Function

symbol description
cachd1 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACHD1 (cache domain containing 1).

NR:

description
PREDICTED: VWFA and cache domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242887.1 True 4503 mRNA 0.52 27 14587270 14642988

Neighbor

gene id symbol gene type direction distance location
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding downstream 4269 14523682 ~ 14583001 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding downstream 94804 14485606 ~ 14492466 (-)
dnajc6 dnajc6,LOC107659052,LOC107692374,LOC107591170,LOC107590617 coding downstream 101790 14458989 ~ 14485480 (-)
lepr LOC107709190,LOC107738956,LOC107692373,LOC107591169,LOC107659051 coding downstream 136998 14414809 ~ 14450272 (-)
pde4ba pde4b,pde4ba,LOC107659050,LOC107692372,LOC108443455,LOC107591166,LOC105913193 coding downstream 184310 14285497 ~ 14402960 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177,LOC107739155 coding upstream 14896 14657884 ~ 14757952 (-)
pgm1 pgm1,LOC107731639,LOC107704513,LOC107591179,LOC107739071,LOC107692428 coding upstream 119723 14762711 ~ 14769897 (-)
efcab7 efcab7,LOC107704512,LOC107731637,LOC107739082,LOC107692381,LOC107591198 coding upstream 127994 14770982 ~ 14780729 (-)
alg6 alg6,LOC107704515,LOC107692382,LOC107591199 coding upstream 146688 14789676 ~ 14801854 (-)
foxd3 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 coding upstream 162316 14805304 ~ 14812624 (-)
G45277 NA non-coding downstream 93248 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 308241 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 370994 14214638 ~ 14216276 (-)
G45270 LOC107692440 non-coding downstream 374284 14211366 ~ 14212986 (-)
G45225 lrrc40,LOC107590628,LOC107709203 non-coding downstream 605385 13981229 ~ 13981885 (-)
LOC122346442 NA non-coding upstream 8728 14651716 ~ 14656031 (-)
G45355 NA non-coding upstream 262514 14905502 ~ 14905708 (-)
G45532 NA non-coding upstream 459702 15102690 ~ 15154616 (-)
G45543 NA non-coding upstream 542164 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 590279 15233267 ~ 15745536 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 394104 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 801367 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 905976 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1689552 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3517804 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 684595 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 846130 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 892398 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 960922 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 1113321 15756309 ~ 15765107 (-)

Expression


Co-expression Network