ttc22 (ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163)


Basic Information

Item Value
gene id ttc22
gene name ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14192585 ~ 14197319 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242906.1
TTAGTCAGGCATTGTCAGTAAGTGTGTGGGAGACAATGGAGGACAGCACAGAGGAGGACATCGAGACTCTGATTGAGGGGATGGCCTACATCCCTGGCCACTTTCATTTGGAGCTCAATCTGAACGGTGAACCCAACGGACCAGTCACCCTTCGGCACCGGGACACCCAGCTGAAGCGCGAGAGCCTCAGGGCTGAGCTCGAAGCGGAGACGGGGAGACTCCAGTACGCTGTGCGCAATATGCTGGGCCTGCTGGCCTTTCATGTAGACGAACTGGAGACAGCAGAGGAGGCCTTCCGCAGCATCTGCCAAGAGGATCCAGAAAACCTCAACGCCTGGGCCAACCTGGGTTACGTCTATGAACGCCTGGGTCGTGAGCTGGAGGAGGGGGAGTGCGTGGAGCGCGTGGCTGCCCTTATGGGCCCAGAGATGGGGGAGAACCAGACAGAATGCAGGCTCAGGGTAGCACGGTGCTTGGCTGAACAGGCTTACGCACATCCTCACGATGTCGAGCTGGAGAGGGAAGAAGATTTACAGGAGAGACTGACATCTGCGCTGATGTTGTACAACCGTGCACTTGATTATGGAGAGGAACTGATATCAACGGAGGAAAAAAGATGCTGGTATTTCAAAATGGCAACAATTTACATAAgGTTAGATGGAATTGTAAGGGATTCAACAGACATTGACCTCACAAGACTGAACTATTTCAACAAGGGCCTCAAGCTCCTCACAGAGACTCTAAAATCTGACAGCACACATCTCAAAGCCCTGGCCTGGTGTTACACTGGTCTCATGCTGGAGCGGACAGAGGAGTTCTCCACCGCAATGTCAGTGCATGACTGTGGTTTCTCCGATCTACCTCTGACGTGTTACGGTTCGGCCATTAAGCTTGCTACGGATGATGCATTCATACTCAACAGACTAGCAAACGTGTTCTTCCTGTCAGGCAAACTAGAGATGGCCACAGGTATCTGTAACATGGCCCTGAGTGTCCTGCCTGATGCAGAACTCAACTGGCAGGCTTACTGCACTCGCGCCAAGCTTAGTGTCACCATGTATGCAAAGGATCTTGATAAAGCCAAGTGTGGCCAAGGTGGCATCCCCGACCGTCAGATTCTGAAAGAGGCCCGCGCTGATCTGGAACGTGTTCTGGCTGTGCGACCCTGTTTGAGAACTCATCTGGAGTTGGGTCAGGTTTACTACTACATGGGTGTGGACGCCCTGCAGGAGAGCCTGTTGGTCGATGAGATGGCGATAAACCAGGCCCTGGTCAGTCTATCTAAAGCTCTGCAGTGTCCTCTAGGCTCTACAATCTCTAAACTACAGCTCCTGCGGGGTCGCTGCCTGCTGCTGAAAGGAGAGGAGCAGAATGCCATCGACTGTTTTAGGAAAGCGCTGGAACTGGAACCTCCCAGCGTCCAAGACACGGCAGTCCTGCGCTGCCTGCTACAGGCGATCCTAGCGAGCTTCACCCAGAGCGGGAACGACACGGGTCAAGCTATAATCCAATTAGAGGAATGTTTAAAGCAGGCGGAAGAGCGATACGGCGCAAACATTGTTCAGACTGAGTTGAAGGCGCTGTGCCGAGCACACACGGATGAGGTGACCGAGCTCTCAAAAGATCTGGTGAGGAAAGGGAGGTTGGAAGTGGTTCGAAAGTTGCTGAAGAGCGTACAGCCACAAGGGAAAAAGTTCTCACTGGGAAGGTCCGTGTCTATTTGAAAGAGCGGGAAGGAACTCCAGATCATGTTCTAGTGGGCAATTATGTGACGTCCATGAGTTGTGCATGTTAAGAGAGGAATAGACTATAATGTAGCTACTCATTTCAAACTACATTGGTAGTGCTGATGTGTCCTAAAGTTCTACAACTATTACTGTAATGTTAATGTCCTAAAGGTTGTTTGGAATGTTATCTTTATGGCAATTCTTTCCTCCAGCGCATGCCACAAAGCATGAAGAGCCAGTTAAACAAGAAATAAGTGTTTAAACCTGGAGATGTAGTGTGGGGTTCACAAGTCTCAGACCTCATTGAAAAACtgggattttaaaaataactcatTAAAAGCTCttgattaaaatatgaaa

Function

symbol description
ttc22 Orthologous to human TTC22 (tetratricopeptide repeat domain 22).

NR:

description
tetratricopeptide repeat protein 22

GO: NA

KEGG:

id description
K24933 TTC22; tetratricopeptide repeat protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242906.1 True 2087 mRNA 0.50 9 14192585 14197319

Neighbor

gene id symbol gene type direction distance location
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding upstream 22499 14133341 ~ 14170086 (+)
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding upstream 71403 14117791 ~ 14121182 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding upstream 76063 14079628 ~ 14116522 (+)
trnag-ucc_2 NA coding upstream 111581 14080933 ~ 14081004 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 206756 13981225 ~ 13985829 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding downstream 298148 14495467 ~ 14523316 (+)
LOC122347575 NA coding downstream 511189 14708508 ~ 14712351 (+)
LOC122347452 LOC107692384,LOC107739088 coding downstream 583607 14780926 ~ 14790192 (+)
dock7 dock7,LOC107591182 coding downstream 718547 14915866 ~ 14957203 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding downstream 767593 14964912 ~ 15008069 (+)
LOC122347615 NA non-coding upstream 61507 14129347 ~ 14131078 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding upstream 64241 14016435 ~ 14128344 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding upstream 195619 13992745 ~ 13996966 (+)
G45070 NA non-coding upstream 331976 13860255 ~ 13860609 (+)
G45056 NA non-coding upstream 355766 13836607 ~ 13836819 (+)
G45112 NA non-coding downstream 16892 14214211 ~ 14215282 (+)
G45095 pde4b,LOC107659050 non-coding downstream 66282 14263601 ~ 14286676 (+)
G45119 pde4b non-coding downstream 100312 14297631 ~ 14298231 (+)
G45121 NA non-coding downstream 121887 14319206 ~ 14320343 (+)
G45122 NA non-coding downstream 130135 14327454 ~ 14328244 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 212299 13972173 ~ 13980286 (+)
G44887 NA other upstream 782673 13394229 ~ 13409912 (+)
G44645 NA other upstream 1083219 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1110466 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1386885 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1038846 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1161542 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1367662 15564981 ~ 15566668 (+)
G45894 NA other downstream 2989389 17186708 ~ 17187308 (+)
G46022 NA other downstream 3797872 17995191 ~ 17996717 (+)

Expression


Co-expression Network